hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-07423584/chunk_1/iprscan-20080502-07423584.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA0600 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00850.10.fs Histone deacetylase domain 310.4 3e-90 1 PF00850.10.ls Histone deacetylase domain 275.9 7.3e-80 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00850.10.ls 1/1 642 986 .. 1 347 [] 275.9 7.3e-80 PF00850.10.fs 1/1 744 986 .. 101 347 .] 310.4 3e-90 Alignments of top-scoring domains: PF00850.10.ls: domain 1 of 1, from 642 to 986: score 275.9, E = 7.3e-80 *->tvayvydpevlnyhfktisygagHpenpeRlrlihelLleygllkkm ++ ++e ++ ++ p+ e+ + ++l + l+++ KIAA0600 642 EDCIQVKDEEGESG------AEEGPDLEEPGAGYKKLFSDAQPLQPL 682 eivtnsqeprkatdeelllvHsedyveflesvsptnlekldkgtNeielk ++++ +++++ + H + ++++p+++ ++ + ++k KIAA0600 683 QVYQ-----APLSLATV--PHQALGRTQSSPAAPGGMKSPPD-Q---PVK 721 yfn...................vgdDtpvfaglye.aaqlsvGgaldaad ++++ +++ + ++ +v++Dt ++++ ++a + +vG+ l++a KIAA0600 722 HLFttgpisqkmyavlpcggigVDSDTVWNEMHSSsAVRMAVGCLLELAF 771 rllegeldiainwagGPgHHAkkgeasGFCylNniAiAIlellkkyPyve ++++gel+++++ +++PgHHA+ ++a+GFC++N +Ai ++ l++k+ +v KIAA0600 772 KVAAGELKNGFAIIRPPGHHAEESTAMGFCFFNSVAITAKLLQQKL-NVG 820 RvliiDiDvHHGDGTQeiFYnddrVltvSfHkygkGefFPGTieGditei +vli+D+D+HHG+GTQ++FYnd+ Vl++S+H+y++G+fFPG+ G ++e+ KIAA0600 821 KVLIVDWDIHHGNGTQQAFYNDPSVLYISLHRYDNGNFFPGS--GAPEEV 868 GkgkGkgytlNiPLl....edGtdDesYleafktiiepvleqFkPdaivv G g G gy++N+ + ++ +++ ++D +Yl af+t+++p++ +F Pd+++v KIAA0600 869 GGGPGVGYNVNVAWTggvdPP-IGDVEYLTAFRTVVMPIAHEFSPDVVLV 917 saGfDalegD..ptmqLgsfnLTiegygeivrflkslaqkhcdgpllvVl saGfDa eg+ +p Lg++++T +++g+ +r l+ la +g++++ l KIAA0600 918 SAGFDAVEGHlsP---LGGYSVTARCFGHLTRQLMTLA----GGRVVLAL 960 EGGYtlraiasavarcwialtggllg<-* EGG +l ai+ a c+ al+++ l+ KIAA0600 961 EGGHDLTAICDASEACVSALLSVELQ 986 PF00850.10.fs: domain 1 of 1, from 744 to 986: score 310.4, E = 3e-90 *->vgdDtpvfaglye.aaqlsvGgaldaadrllegeldiainwagGPgH v++Dt ++++ ++a + +vG+ l++a ++++gel+++++ +++PgH KIAA0600 744 VDSDTVWNEMHSSsAVRMAVGCLLELAFKVAAGELKNGFAIIRPPGH 790 HAkkgeasGFCylNniAiAIlellkkyPyveRvliiDiDvHHGDGTQeiF HA+ ++a+GFC++N +Ai ++ l++k+ +v +vli+D+D+HHG+GTQ++F KIAA0600 791 HAEESTAMGFCFFNSVAITAKLLQQKL-NVGKVLIVDWDIHHGNGTQQAF 839 YnddrVltvSfHkygkGefFPGTieGditeiGkgkGkgytlNiPLl.... Ynd+ Vl++S+H+y++G+fFPG+ G ++e+G g G gy++N+ + ++ + KIAA0600 840 YNDPSVLYISLHRYDNGNFFPGS--GAPEEVGGGPGVGYNVNVAWTggvd 887 edGtdDesYleafktiiepvleqFkPdaivvsaGfDalegD..ptmqLgs ++ ++D +Yl af+t+++p++ +F Pd+++vsaGfDa eg+ +p Lg+ KIAA0600 888 PP-IGDVEYLTAFRTVVMPIAHEFSPDVVLVSAGFDAVEGHlsP---LGG 933 fnLTiegygeivrflkslaqkhcdgpllvVlEGGYtlraiasavarcwia +++T +++g+ +r l+ la +g++++ lEGG +l ai+ a c+ a KIAA0600 934 YSVTARCFGHLTRQLMTLA----GGRVVLALEGGHDLTAICDASEACVSA 979 ltggllg<-* l+++ l+ KIAA0600 980 LLSVELQ 986 //