hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-07473075/chunk_1/iprscan-20080502-07473075.nocrc
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Query sequence: KIAA0603
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00164                                                 269.4    2.8e-76   1
SM00462                                                 244.6    8.2e-69   2

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00462    1/2      80   240 ..     1   156 []   116.1    4e-30
SM00462    2/2     246   499 ..     1   156 []   128.5  7.1e-34
SM00164    1/1     965  1185 ..     1   310 []   269.4  2.8e-76

Alignments of top-scoring domains:
SM00462: domain 1 of 2, from 80 to 240: score 116.1, E = 4e-30
                   *->segvsfeVkYLGsvevpearkSlapgkglqvlqeairklr.......
                      ++ ++f+++Y+G +++++ +        l +l ++++++r+++++++
    KIAA0603    80    PSDKRFRLWYVGGSCLDHRT-------TLPMLPWLMAEIRrrsqkpe 119  

                   ...sekkkpqkvilsvSsdgvklidektk................qvlae
                    ++++ ++ ++vil +S   ++++ + + + +++++++ +++++  ++ e
    KIAA0603   120 aggCGAPAAREVILVLSAPFLRCVPAPGAgasggtspsatqpnpaVFIFE 169  

                   hplrrIsfcaadpqrwntGgdgstdddrvFgyiardpgssgSnrgtsrfa
                   h +++Is+  + +           +d+ +F+y +++++++    ++s++a
    KIAA0603   170 HKAQHISRFIHNS-----------HDLTYFAYLIKAQPDD----PESQMA 204  

                   CHVFrcekaa.aedialaigqaFqvayelklkarse<-*
                   CHVFr +++++++d++++i+q+ + a+++++k +++   
    KIAA0603   205 CHVFRATDPSqVPDVISSIRQLSKAAMKEDAKPSKD    240  

SM00462: domain 2 of 2, from 246 to 499: score 128.5, E = 7.1e-34
                   *->segvsfeVkYLGsvevpearkSlapgkglqvlqeairklr.......
                         ++feV+Y+G v v++++      +++ +++++++k++ +++++ 
    KIAA0603   246    YNSQKFEVLYCGKVTVTHKK------APSSLIDDCMEKFSlheqqrl 286  

                   ..................................................
                   + ++++++++++++  + +   ++++++  +++ ++++++ + + + +++
    KIAA0603   287 kiqgeqrgpdpgedladlevvvpgspgdclpeeadgtdthlglpagasqp 336  

                   ..................................................
                     ++++   +++  ++++ +++++ +++ ++ ++ +++ +++++++++++
    KIAA0603   337 altssrvcfperiledsgfdeqqefrsrcssvtgvqrrvhegsqksqprr 386  

                   ...........sekkkpqkvilsvSsdgvklidektkqvlaehplrrIsf
                   ++ + +++ ++s+++k+++++++v +  ++li+++tk v++e++++ Is 
    KIAA0603   387 rhasapshvqpSDSEKNRTMLFQVGRFEINLISPDTKSVVLEKNFKDISS 436  

                   caadpqrwntGgdgstdddrvFgyiardpgssgSnrgtsrfaCHVFrcek
                   c++++           +++++Fg+i+r+ +      g s+++C+VF+c++
    KIAA0603   437 CSQGI-----------KHVDHFGFICRESPEP----GLSQYICYVFQCAS 471  

                   aa.aedialaigqaFqvayelklkarse<-*
                   ++ +++++l+++qaF++a+ l+ +++++   
    KIAA0603   472 ESlVDEVMLTLKQAFSTAAALQSAKTQI    499  

SM00164: domain 1 of 1, from 965 to 1185: score 269.4, E = 2.8e-76
                   *->vrkGvppslRgeVWklLlnaqpmntsnweraqka.kdaesqflvvnd
                       + Gvp s Rge+W++L+ +++  +  + ++q+++            
    KIAA0603   965    LKEGVPKSRRGEIWQFLALQYRLRHRLPNKQQPPdIS---------- 1001 

                   drlkdeYsrllnqtapkdkstdleqavssnnkdfeeqPLsiwnffqdnds
                         Y +ll+q   +++                               
    KIAA0603  1002 ------YKELLKQLTAQQH------------------------------- 1014 

                   ldqIekDlkRtfpelsfFqfrsrdnqkevllddengpgqesLrrvLkaYs
                     +I +Dl Rtfp++++F               + gpgq sL+++LkaYs
    KIAA0603  1015 --AILVDLGRTFPTHPYFSV-------------QLGPGQLSLFNLLKAYS 1049 

                   lynpehivgYcQGmnflaapLLlvmpiydEedAFwcfvkLmerylpnflf
                   l+++e  vgYcQG++f+a++LLl+m   +Ee+AF ++++Lm++ + ++ +
    KIAA0603  1050 LLDKE--VGYCQGISFVAGVLLLHM---SEEQAFEMLKFLMYDLGFRKQY 1094 

                   kdtnnfytpdlsglqadqlvldslleeylPeLykHLqeqdkqskkkhvdk
                          +pd++ lq+++++l++ll++y+ +Ly+HL+e            
    KIAA0603  1095 -------RPDMMSLQIQMYQLSRLLHDYHRDLYNHLEE------------ 1125 

                   leidpslyalrWfLtlFarelPledvlRiwDvlfaellrlgseflfkial
                   +ei+pslya++WfLtlFa++++l++v+R++D++f++    g e++fk+al
    KIAA0603  1126 NEISPSLYAAPWFLTLFASQFSLGFVARVFDIIFLQ----GTEVIFKVAL 1171 

                   aiLklnedkllkld<-*
                   ++L ++e++++++    
    KIAA0603  1172 SLLSSQETLIMECE    1185 

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