hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-07491304/chunk_1/iprscan-20080502-07491304.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA0604 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF05649.3.fs Peptidase family M13 639.4 1.3e-213 1 PF05649.3.ls Peptidase family M13 641.3 7.2e-190 1 PF01431.11.ls Peptidase family M13 266.8 4e-77 1 PF01431.11.fs Peptidase family M13 264.9 1.5e-76 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF05649.3.fs 1/1 123 510 .. 1 406 [] 639.4 1.3e-213 PF05649.3.ls 1/1 123 510 .. 1 406 [] 641.3 7.2e-190 PF01431.11.fs 1/1 569 772 .. 1 220 [] 264.9 1.5e-76 PF01431.11.ls 1/1 569 772 .. 1 220 [] 266.8 4e-77 Alignments of top-scoring domains: PF05649.3.fs: domain 1 of 1, from 123 to 510: score 639.4, E = 1.3e-213 *->apcdDFYdfvNGkWlktnpIPaDktrwGsFdeLaeeieKerqrelle +pc+DFY+f +G+W+++np+P+ ++rw++F++L+++++ +++++lle KIAA0604 123 SPCEDFYQFSCGGWIRRNPLPDGRSRWNTFNSLWDQNQ-AILKHLLE 168 aaaagdkapeagsdeqkagFtkfYrsgmDeaaIEaaGvqPikpdLekIgg + + + ++ +++eqk + + fY s+++ ++IE++G+qP+++++ekIgg KIAA0604 169 N-TTFN--SS-SEAEQKTQ-R-FYLSCLQVERIEELGAQPLRDLIEKIGG 212 WaiskqkdvaRansfnellaareaqggplpfFsFgvspDfKnskrnvaya W+i++++d++ n f+e+l+a++++++++pfF+ ++s+D+K+s+ nv+++ KIAA0604 213 WNITGPWDQD--N-FMEVLKAVAGTYRATPFFTVYISADSKSSNSNVIQV 259 dQgGLgLPdrtyYldqdeakqkllaAlYlayieklLellGvvdaeeakeq dQ+GL+LP+r+yYl+ + a++k+l+A Yl+y+e+l++llG +++++ +eq KIAA0604 260 DQSGLFLPSRDYYLN-RTANEKVLTA-YLDYMEELGMLLG-GRPTSTREQ 306 AkkvlalEtrLAnvslsreerrDyaklYNpvtlaelqklaPhldtWldfl +++vl+lE++LAn+++++ +rrD++k+Y++++++elq+laP++d Wl+fl KIAA0604 307 MQQVLELEIQLANITVPQDQRRDEEKIYHKMSISELQALAPSMD-WLEFL 355 aalglpHildlpdkesviVpeprffkeldallaetpldRtlkaYLifhvv + l++p l+l+d+e+v+V+ +++++++++l+++t+++ +l++YLi+++v KIAA0604 356 SFLLSP--LELSDSEPVVVYGMDYLQQVSELINRTEPS-ILNNYLIWNLV 402 daaapyLskdFrdarfaFygktLsGqpearpRWKraldlangafGeALGq +++++ L+++F+ a+ +++++++ ++ + pRW+ ++ +++ a+G+ALG KIAA0604 403 QKTTSSLDRRFESAQEKLLETLYGTKKSCVPRWQTCISNTDDALGFALGS 452 lYVkkyFspeaKadveelVanirtAlkaRLekHldWMspETkekAieKLa l+Vk+ F++++K+ +e ++++irtA++++L + l+WM+++T+++A+eK++ KIAA0604 453 LFVKATFDRQSKEIAEGMISEIRTAFEEALGQ-LVWMDEKTRQAAKEKAD 501 aftvkIGYP<-* a++ +IG+P KIAA0604 502 AIYDMIGFP 510 PF05649.3.ls: domain 1 of 1, from 123 to 510: score 641.3, E = 7.2e-190 *->apcdDFYdfvNGkWlktnpIPaDktrwGsFdeLaeeieKerqrelle +pc+DFY+f +G+W+++np+P+ ++rw++F++L+++++ +++++lle KIAA0604 123 SPCEDFYQFSCGGWIRRNPLPDGRSRWNTFNSLWDQNQ-AILKHLLE 168 aaaagdkapeagsdeqkagFtkfYrsgmDeaaIEaaGvqPikpdLekIgg + + + ++ +++eqk + + fY s+++ ++IE++G+qP+++++ekIgg KIAA0604 169 N-TTFN--SS-SEAEQKTQ-R-FYLSCLQVERIEELGAQPLRDLIEKIGG 212 WaiskqkdvaRansfnellaareaqggplpfFsFgvspDfKnskrnvaya W+i++++d++ n f+e+l+a++++++++pfF+ ++s+D+K+s+ nv+++ KIAA0604 213 WNITGPWDQD--N-FMEVLKAVAGTYRATPFFTVYISADSKSSNSNVIQV 259 dQgGLgLPdrtyYldqdeakqkllaAlYlayieklLellGvvdaeeakeq dQ+GL+LP+r+yYl+ + a++k+l+A Yl+y+e+l++llG +++++ +eq KIAA0604 260 DQSGLFLPSRDYYLN-RTANEKVLTA-YLDYMEELGMLLG-GRPTSTREQ 306 AkkvlalEtrLAnvslsreerrDyaklYNpvtlaelqklaPhldtWldfl +++vl+lE++LAn+++++ +rrD++k+Y++++++elq+laP++d Wl+fl KIAA0604 307 MQQVLELEIQLANITVPQDQRRDEEKIYHKMSISELQALAPSMD-WLEFL 355 aalglpHildlpdkesviVpeprffkeldallaetpldRtlkaYLifhvv + l++p l+l+d+e+v+V+ +++++++++l+++t+++ +l++YLi+++v KIAA0604 356 SFLLSP--LELSDSEPVVVYGMDYLQQVSELINRTEPS-ILNNYLIWNLV 402 daaapyLskdFrdarfaFygktLsGqpearpRWKraldlangafGeALGq +++++ L+++F+ a+ +++++++ ++ + pRW+ ++ +++ a+G+ALG KIAA0604 403 QKTTSSLDRRFESAQEKLLETLYGTKKSCVPRWQTCISNTDDALGFALGS 452 lYVkkyFspeaKadveelVanirtAlkaRLekHldWMspETkekAieKLa l+Vk+ F++++K+ +e ++++irtA++++L + l+WM+++T+++A+eK++ KIAA0604 453 LFVKATFDRQSKEIAEGMISEIRTAFEEALGQ-LVWMDEKTRQAAKEKAD 501 aftvkIGYP<-* a++ +IG+P KIAA0604 502 AIYDMIGFP 510 PF01431.11.fs: domain 1 of 1, from 569 to 772: score 264.9, E = 1.5e-76 *->NAyYnpefNyitfpagilqpPffDlqqPravNyggiGfVlgHElmHg NAyY p+ N+i+fpagilq+Pf+ + P+a N+ggiG+V+gHEl+H+ KIAA0604 569 NAYYLPTKNEIVFPAGILQAPFYARNHPKALNFGGIGVVMGHELTHA 615 FDdqGiqlDppgsLadcswNlatWkvtdednkcfqdrvkclidqyseavk FDdqG+++D++g Nl+ W + e++++f++ + c+ +qy +++ KIAA0604 616 FDDQGREYDKEG-------NLRPW-WQNESLAAFRNHTACMEEQY-NQYQ 656 PedgnfnpcankGatTfgEniADlgGlriAlkayakklsdeggeEtrlpg ++++ n G +T+gEniAD+gGl +A++ay+ ++++geE++lp KIAA0604 657 VNGERLN-----GRQTLGENIADNGGLKAAYNAYK-AWLRKHGEEQQLPA 700 LknfTpdQlfFetyAqswCrkgspenlltqllvdpHsPnelRvNgavrqm +T+ QlfF ++Aq+wC+ ++pe+++ l +dpHsP+ +Rv g++++ KIAA0604 701 VG-LTNHQLFFVGFAQVWCSVRTPESSHEGLVTDPHSPARFRVLGTLSNS 749 PaFssaFnCkpGDrMfpepekrc<-* +F + F+C+ G++M+p + +++ KIAA0604 750 RDFLRHFGCPVGSPMNPGQLCEV 772 PF01431.11.ls: domain 1 of 1, from 569 to 772: score 266.8, E = 4e-77 *->NAyYnpefNyitfpagilqpPffDlqqPravNyggiGfVlgHElmHg NAyY p+ N+i+fpagilq+Pf+ + P+a N+ggiG+V+gHEl+H+ KIAA0604 569 NAYYLPTKNEIVFPAGILQAPFYARNHPKALNFGGIGVVMGHELTHA 615 FDdqGiqlDppgsLadcswNlatWkvtdednkcfqdrvkclidqyseavk FDdqG+++D++g Nl+ W + e++++f++ + c+ +qy +++ KIAA0604 616 FDDQGREYDKEG-------NLRPW-WQNESLAAFRNHTACMEEQY-NQYQ 656 PedgnfnpcankGatTfgEniADlgGlriAlkayakklsdeggeEtrlpg ++++ n G +T+gEniAD+gGl +A++ay+ ++++geE++lp KIAA0604 657 VNGERLN-----GRQTLGENIADNGGLKAAYNAYK-AWLRKHGEEQQLPA 700 LknfTpdQlfFetyAqswCrkgspenlltqllvdpHsPnelRvNgavrqm +T+ QlfF ++Aq+wC+ ++pe+++ l +dpHsP+ +Rv g++++ KIAA0604 701 VG-LTNHQLFFVGFAQVWCSVRTPESSHEGLVTDPHSPARFRVLGTLSNS 749 PaFssaFnCkpGDrMfpepekrc<-* +F + F+C+ G++M+p + +++ KIAA0604 750 RDFLRHFGCPVGSPMNPGQLCEV 772 //