hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-07541279/chunk_1/iprscan-20080502-07541279.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA0607 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF05536.2.ls Neurochondrin 1672.6 0 1 PF05536.2.fs Neurochondrin 1670.8 0 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF05536.2.fs 1/1 20 731 .] 1 790 [] 1670.8 0 PF05536.2.ls 1/1 20 731 .] 1 790 [] 1672.6 0 Alignments of top-scoring domains: PF05536.2.fs: domain 1 of 1, from 20 to 731: score 1670.8, E = 0 *->MAaaPePALnqAEeRsPsLekclklLkgekddsekfAALLLVTKlvK MA+++ePALnqAE R+P+Le++l++L+++k+dse+fAALLLVTK+vK KIAA0607 20 MASDCEPALNQAEGRNPTLERYLGALREAKNDSEQFAALLLVTKAVK 66 adDidAknkklvFeAVGftFLdrLLvtkeapdDCpDnRDVykavsvavLA a+DidAk+++++F+AVGftF++rLL+tkeapd+CpD+ V++a++va+LA KIAA0607 67 AGDIDAKTRRRIFDAVGFTFPNRLLTTKEAPDGCPDH--VLRALGVALLA 114 cFCrepELAsheevvdkIPlLvevlekaddeddedrlimvedaYecLkaV cFC++pELA h++v++kIP+L ++l++++d+dd++r++m++d+Y+cL+aV KIAA0607 115 CFCSDPELAAHPQVLNKIPILSTFLTARGDPDDAARRSMIDDTYQCLTAV 164 SaateaGlraLiasGavrvlaqqmSeysdqSyamdeALkLLvLLvskldv a+t++G+r+Lia+G+v++l+q +y++++y++d+AL+LLv+L++++++ KIAA0607 165 -AGTPRGPRHLIAGGTVSALCQ---AYLGHGYGFDQALALLVGLLAAAET 210 vSwkiEaeleLsaviravArdfevaedalKFElcrLLPLFLPPaaVlsec ++wk Eae++L+av+r++++df+ aeda+KFElc+LLPLFLPP++V++ec KIAA0607 211 QCWK-EAEPDLLAVLRGLSEDFQKAEDASKFELCQLLPLFLPPTTVPPEC 259 rrellHEPlrSledniWadyLrkGvaaILkakvapkqrdpALkLaarllh +r+ L++G+a+IL++k++++qr+pALkLaarl+h KIAA0607 260 YRD-----------------LQAGLARILGSKLSSWQRNPALKLAARLAH 292 vLGekWllGGVKLPNvDesadkfLlLllelsaVEVrllLdeLAYKKYEAP ++G++W++ ++s++kfL+Ll++l++VEVrl+L+e KIAA0607 293 ACGSDWIP-------AGSSGSKFLALLVNLACVEVRLALEE--------- 326 KDNkkaEvilkkeelLticFSLlEkiIqeYissAGENeqtlleekekqkv +++Ev ke+++t+c++L+E++Iqe++++ eq+ll+e++k+++ KIAA0607 327 ---TGTEV---KEDVVTACYALMELGIQECTRC----EQSLLKEPQKVQL 366 vkiLkeavgaVleyLrdvkeekikessdPKDKKFvfAsVrVLgAwLAeet v+++kea+gaV++yL++v+ ek+ke+ FvfAsVr+LgAwLAeet KIAA0607 367 VSVMKEAIGAVIHYLLQVGSEKQKEP-------FVFASVRILGAWLAEET 409 vAlreeVydLLpFmLkvakelyeElkEAsDisqqvAnLairatTrdeesP ++lr+eV++LLpF++++ak+lyeE++EA D+sqqvAnLai++tT+++ +P KIAA0607 410 SSLRKEVCQLLPFLVRYAKTLYEEAEEANDLSQQVANLAISPTTPGPTWP 459 idalrlLLPaLChltveeearkvLikekaDevlvesLEFYyflaqWklts +dalrlLLP++Chltve+++r++Like+a+++l++ yfl+qW+lts KIAA0607 460 GDALRLLLPGWCHLTVEDGPREILIKEGAPSLLCK-----YFLQQWELTS 504 iPRAERLKRmnEPDPvPthdtsvlmdvvrialvalCnIllNlvVlePkki P+hdtsvl+d+v+i+l+++C+I+lNlvV++P++i KIAA0607 505 ----------------PGHDTSVLPDSVEIGLQTCCHIFLNLVVTAPGLI 538 kddacfikLlervveslPeLkddeDrlvllAnvavLgLLLkrllSkkvkl k+dacf++L++++++slP L+++++rl+l+Anva+LgLL++rllS++++l KIAA0607 539 KRDACFTSLMNTLMTSLPALVQQQGRLLLAANVATLGLLMARLLSTSPAL 588 ndfsisRGyiaAaIlFLsdayvieeisssdiavLavslkykgyWADlsel +++++sRG++aAaIlFLs+++v++++++sd+avLa+s++y+g+WADl+el KIAA0607 589 QGTPASRGFFAAAILFLSQSHVARATPGSDQAVLALSPEYEGIWADLQEL 638 wflgMqAasgcvpLlpwlSeaALrSrWaeeLvkslkdvkarlvkaelkSA wflgMqA++gcvpLlpwl++aALrSrW++eL+++l++v++++vk+e+++A KIAA0607 639 WFLGMQAFTGCVPLLPWLAPAALRSRWPQELLQLLGSVSPNSVKPEMVAA 688 YqDvLveLvdvNsdvrdvLkliaAeesariyRmaaLekkLved<-* Yq+vLveL+++N+++r++++l+a+ee+a++yRmaaLe++L+e+ KIAA0607 689 YQGVLVELARANRLCREAMRLQAGEETASHYRMAALEQCLSEP 731 PF05536.2.ls: domain 1 of 1, from 20 to 731: score 1672.6, E = 0 *->MAaaPePALnqAEeRsPsLekclklLkgekddsekfAALLLVTKlvK MA+++ePALnqAE R+P+Le++l++L+++k+dse+fAALLLVTK+vK KIAA0607 20 MASDCEPALNQAEGRNPTLERYLGALREAKNDSEQFAALLLVTKAVK 66 adDidAknkklvFeAVGftFLdrLLvtkeapdDCpDnRDVykavsvavLA a+DidAk+++++F+AVGftF++rLL+tkeapd+CpD+ V++a++va+LA KIAA0607 67 AGDIDAKTRRRIFDAVGFTFPNRLLTTKEAPDGCPDH--VLRALGVALLA 114 cFCrepELAsheevvdkIPlLvevlekaddeddedrlimvedaYecLkaV cFC++pELA h++v++kIP+L ++l++++d+dd++r++m++d+Y+cL+aV KIAA0607 115 CFCSDPELAAHPQVLNKIPILSTFLTARGDPDDAARRSMIDDTYQCLTAV 164 SaateaGlraLiasGavrvlaqqmSeysdqSyamdeALkLLvLLvskldv a+t++G+r+Lia+G+v++l+q +y++++y++d+AL+LLv+L++++++ KIAA0607 165 -AGTPRGPRHLIAGGTVSALCQ---AYLGHGYGFDQALALLVGLLAAAET 210 vSwkiEaeleLsaviravArdfevaedalKFElcrLLPLFLPPaaVlsec ++wk Eae++L+av+r++++df+ aeda+KFElc+LLPLFLPP++V++ec KIAA0607 211 QCWK-EAEPDLLAVLRGLSEDFQKAEDASKFELCQLLPLFLPPTTVPPEC 259 rrellHEPlrSledniWadyLrkGvaaILkakvapkqrdpALkLaarllh +r+ L++G+a+IL++k++++qr+pALkLaarl+h KIAA0607 260 YRD-----------------LQAGLARILGSKLSSWQRNPALKLAARLAH 292 vLGekWllGGVKLPNvDesadkfLlLllelsaVEVrllLdeLAYKKYEAP ++G++W++ ++s++kfL+Ll++l++VEVrl+L+e KIAA0607 293 ACGSDWIP-------AGSSGSKFLALLVNLACVEVRLALEE--------- 326 KDNkkaEvilkkeelLticFSLlEkiIqeYissAGENeqtlleekekqkv +++Ev ke+++t+c++L+E++Iqe++++ eq+ll+e++k+++ KIAA0607 327 ---TGTEV---KEDVVTACYALMELGIQECTRC----EQSLLKEPQKVQL 366 vkiLkeavgaVleyLrdvkeekikessdPKDKKFvfAsVrVLgAwLAeet v+++kea+gaV++yL++v+ ek+ke+ FvfAsVr+LgAwLAeet KIAA0607 367 VSVMKEAIGAVIHYLLQVGSEKQKEP-------FVFASVRILGAWLAEET 409 vAlreeVydLLpFmLkvakelyeElkEAsDisqqvAnLairatTrdeesP ++lr+eV++LLpF++++ak+lyeE++EA D+sqqvAnLai++tT+++ +P KIAA0607 410 SSLRKEVCQLLPFLVRYAKTLYEEAEEANDLSQQVANLAISPTTPGPTWP 459 idalrlLLPaLChltveeearkvLikekaDevlvesLEFYyflaqWklts +dalrlLLP++Chltve+++r++Like+a+++l++ yfl+qW+lts KIAA0607 460 GDALRLLLPGWCHLTVEDGPREILIKEGAPSLLCK-----YFLQQWELTS 504 iPRAERLKRmnEPDPvPthdtsvlmdvvrialvalCnIllNlvVlePkki P+hdtsvl+d+v+i+l+++C+I+lNlvV++P++i KIAA0607 505 ----------------PGHDTSVLPDSVEIGLQTCCHIFLNLVVTAPGLI 538 kddacfikLlervveslPeLkddeDrlvllAnvavLgLLLkrllSkkvkl k+dacf++L++++++slP L+++++rl+l+Anva+LgLL++rllS++++l KIAA0607 539 KRDACFTSLMNTLMTSLPALVQQQGRLLLAANVATLGLLMARLLSTSPAL 588 ndfsisRGyiaAaIlFLsdayvieeisssdiavLavslkykgyWADlsel +++++sRG++aAaIlFLs+++v++++++sd+avLa+s++y+g+WADl+el KIAA0607 589 QGTPASRGFFAAAILFLSQSHVARATPGSDQAVLALSPEYEGIWADLQEL 638 wflgMqAasgcvpLlpwlSeaALrSrWaeeLvkslkdvkarlvkaelkSA wflgMqA++gcvpLlpwl++aALrSrW++eL+++l++v++++vk+e+++A KIAA0607 639 WFLGMQAFTGCVPLLPWLAPAALRSRWPQELLQLLGSVSPNSVKPEMVAA 688 YqDvLveLvdvNsdvrdvLkliaAeesariyRmaaLekkLved<-* Yq+vLveL+++N+++r++++l+a+ee+a++yRmaaLe++L+e+ KIAA0607 689 YQGVLVELARANRLCREAMRLQAGEETASHYRMAALEQCLSEP 731 //