hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-07573174/chunk_1/iprscan-20080502-07573174.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA0609 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF01501.10.ls Glycosyl transferase family 8 -7.1 4.9e-06 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF01501.10.ls 1/1 205 481 .. 1 345 [] -7.1 4.9e-06 Alignments of top-scoring domains: PF01501.10.ls: domain 1 of 1, from 205 to 481: score -7.1, E = 4.9e-06 *->pivlalddnYLDplyHYaLfSDNvlgagvlikSlllhnsdpekvfhf + +++++n + +++l+kS+l h KIAA0609 205 VAIVCAGYNA-------------SRDVVTLVKSVLFHRR-------- 230 lskhvfhivTDknyamfpwlhlkfyiltddvseenieklnelgsqysevd l f+++ d++ e+ ++ l +++ + v KIAA0609 231 -------------------NPLHFHLIADSIAEQILATL-FQTWMVPAV- 259 riefsdiemlekyprnsinsylidckllkslflnlk.llkkhwsllnyaR r++f + l++ + ++k + ++ + + KIAA0609 260 RVDFYNADELKSEVS--------------------WiPNKHYSGIYGLMK 289 lflpdlf.pqydKvlYLDaDiiVllgdldeLfdidlggkvlaAVeDydyv l l + ++ ++++v+ LD Di + d++eL++ v KIAA0609 290 LVLTKTLpANLERVIVLDTDITF-ATDIAELWA----------------V 322 cDcfsekcfe.chanfekyfdrypefkealslslggppry.pcyFNaGvl + f+ + ++ n++ + ++++++ p+ + + ++N+Gv+ KIAA0609 323 FHKFKGQQVLgLVENQSDWYLGNLWKNHR-------PWPAlGRGYNTGVI 365 vinlkkWreenitek.liewmlnkkgrrtllklgDQdiLNivFkdWhlrL ++ l+k r+++ ++ ++ ++ + + l+DQdi+N+v+k + KIAA0609 366 LLLLDKLRKMKWEQMwRLTA-ERELMGMLSTSLADQDIFNAVIK----QN 410 .gkvkfLppryNvqglgy.......................fke.kdysk + v++Lp+++Nvq + +++++ ++ ++ + +++ ++ + ++++ KIAA0609 411 pFLVYQLPCFWNVQLSDHtrseqcyrdvsdlklqkqlseldEDDlCYEFR 460 kkyrklipeepkviHYiGaptKPWldla<-* ++++ ++ +++HY + ++a KIAA0609 461 RERFTVHRTHLYFLHYEY-------EPA 481 //