hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /db/iprscan/data/Pfam.bin
Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-08165597/chunk_1/iprscan-20080502-08165597.nocrc
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Query sequence: KIAA0620
Accession: [none]
Description: [none]
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
PF08337.2.ls Plexin cytoplasmic region 1302.9 0 1
PF08337.2.fs Plexin cytoplasmic region 1301.2 0 1
PF01833.14.fs IPT/TIG domain 166.0 2.9e-47 3
PF01833.14.ls IPT/TIG domain 166.3 7e-47 3
PF01437.15.fs Plexin repeat 97.8 2e-31 3
PF01437.15.ls Plexin repeat 96.1 1e-25 3
PF01403.10.fs Sema domain 25.9 3.7e-07 2
PF01403.10.ls Sema domain -93.9 2.4e-06 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
PF01403.10.fs 1/2 119 220 .. 1 110 [. 20.6 1.1e-05
PF01403.10.ls 1/1 119 589 .. 1 490 [] -93.9 2.4e-06
PF01437.15.ls 1/3 608 661 .. 1 63 [] 62.1 1.6e-15
PF01437.15.fs 1/3 608 661 .. 1 63 [] 60.3 3.8e-19
PF01437.15.fs 2/3 761 813 .. 1 63 [] 31.5 1e-09
PF01437.15.ls 2/3 761 813 .. 1 63 [] 33.2 8.4e-07
PF01833.14.ls 1/3 951 1038 .. 1 104 [] 70.6 4.8e-18
PF01833.14.fs 1/3 951 1038 .. 1 104 [] 68.8 3.3e-19
PF01833.14.ls 2/3 1041 1125 .. 1 104 [] 71.5 2.5e-18
PF01833.14.fs 2/3 1041 1125 .. 1 104 [] 69.7 1.8e-19
PF01833.14.ls 3/3 1129 1210 .. 1 104 [] 24.3 0.0004
PF01833.14.fs 3/3 1129 1187 .. 1 71 [. 27.6 2.5e-07
PF08337.2.fs 1/1 1404 1948 .. 1 586 [] 1301.2 0
PF08337.2.ls 1/1 1404 1948 .. 1 586 [] 1302.9 0
Alignments of top-scoring domains:
PF01403.10.fs: domain 1 of 2, from 119 to 220: score 20.6, E = 1.1e-05
*->frtllldedrgrLyVGArNhvyvLnledlserlqqkigWpss....p
+ + ld + g++y +A N++y L++++ls+ ++ ++g+ ++++ +
KIAA0620 119 TNNFALDGAAGTVYLAAVNRLYQLSGANLSLEAEAAVGPVPDsplcH 165
.geekceeCkmkGkspgcVeteCqNfirVLq.pyndthLyvCGTnaFqPv
++ + +C ++ + + N++++Lq +++++ ++vCG+ + q+
KIAA0620 166 aPQLPQASCEHPRRL-------TDNYNKILQlDPGQGLVVVCGSIY-QGF 207
CtlinlgdrseAviiaetd<-*
C+l+++g+ i++++
KIAA0620 208 CQLRRRGN------ISAVA 220
PF01403.10.ls: domain 1 of 1, from 119 to 589: score -93.9, E = 2.4e-06
*->frtllldedrgrLyVGArNhvyvLnledlserlqqkigWpss....p
+ + ld + g++y +A N++y L++++ls+ ++ ++g+ ++++ +
KIAA0620 119 TNNFALDGAAGTVYLAAVNRLYQLSGANLSLEAEAAVGPVPDsplcH 165
.geekceeCkmkGkspgcVeteCqNfirVLq.pyndthLyvCGTnaFqPv
++ + +C ++ + + N++++Lq +++++ ++vCG+ + q+
KIAA0620 166 aPQLPQASCEHPRRL-------TDNYNKILQlDPGQGLVVVCGSIY-QGF 207
CtlinlgdrseAviiaetdcLFsldvekeesGkgrCPydPlhnstsvlvq
C+l+++g+ s++ +++ + P+ P + s l+
KIAA0620 208 CQLRRRGN-------------ISAVAVRFPPAAP--PAEPVTVFPSMLN- 241
grtge.....................LYsGtvaDssvaasFsGrdpa.Ir
+ ++++ ++ + ++ + ++++L +G ++ G+++ ++
KIAA0620 242 -VAANhpnastvglvlppaagaggsrLLVGATYT------GYGSSFFpRN 284
Rslg................................shdplrTeqhdskw
Rsl++++ +++++ ++ +++++ + + + ++++ l+ q +
KIAA0620 285 RSLEdhrfentpeiairsldtrgdlaklftfdlnpsDDNILKIKQGAKEQ 334
lnePnFVdsypipyvhsf.dDdkVYF.FFrE.taveyspncgkaiysRVa
+++ FV++++ p ++ ++ + Y+ + E +a +++ ++ s +a
KIAA0620 335 HKLG-FVSAFLHPSDPPPgAQSYAYLaLNSEaRAGDKE----SQARSLLA 379
RvCk.nDvGG..rrylelnkWTTFLKARLnCSvpGeegipkfyFNeLQav
R+C ++ GG+ + + e ++ L C +G + + + L +v
KIAA0620 380 RICLpHGAGGdaKKLTE-----SYIQLGLQC-AGGAGRGD--LYSRLVSV 421
fllptganlAreLgIserdpviYGVFttssnsiagpgdnSAVCaFsmsdI
f +++ ++++VF ++ s a++ A+CaF +d+
KIAA0620 422 FPARE---------------RLFAVFERPQGSPAARAAPAALCAFRFADV 456
rqvFenGpfkhqssEgpnskwlpyrglkvPyPRPGqCpndssgpnytStk
r++++ ++ + p + + + v + C + +
KIAA0620 457 RAAIRAARTACFVE--PAPDVVAVLD-SVVQGTGPACERKLNI------- 496
dl.PDdtlnfikshpLmdevvpPlhnrPlfvgtsvnyrlTqIaVdkrVra
l+P+ + + + + + +Pl P+f ++ T++aV +
KIAA0620 497 QLqPEQLDCGAAHLQHPLSILQPLKATPVFRAPGL----TSVAVA---SV 539
gdGqlYtVlFlGTddGtvlKkvvvlsrsss.syeevvleelqvfkdprie
+ Yt +FlGT +G++l + l ++s vv+ + ++ + e
KIAA0620 540 NN---YTAVFLGTVNGRLL--KINL--NESmQ---VVSRRVVTVAYG--E 577
Pvqn.leisskq<-*
Pv++ ++ + +
KIAA0620 578 PVHHvMQFDPAD 589
PF01437.15.ls: domain 1 of 3, from 608 to 661: score 62.1, E = 1.6e-15
*->nCsqytsCssCLaardpfyCgWCssegrCtrgsaytsfygeCprse.
C ++++C++C++a d yCgWC++e rCt+++ +C++s++
KIAA0620 608 ACNVHSTCGDCVGAADA-YCGWCALETRCTLQQ-------DCTNSSq 646
pendqwldwswssskCp<-*
++ w+ +s s+Cp
KIAA0620 647 QH--FWTSASEGPSRCP 661
PF01437.15.fs: domain 1 of 3, from 608 to 661: score 60.3, E = 3.8e-19
*->nCsqytsCssCLaardpfyCgWCssegrCtrgsaytsfygeCprse.
C ++++C++C++a d yCgWC++e rCt+++ +C++s++
KIAA0620 608 ACNVHSTCGDCVGAADA-YCGWCALETRCTLQQ-------DCTNSSq 646
pendqwldwswssskCp<-*
++ w+ +s s+Cp
KIAA0620 647 QH--FWTSASEGPSRCP 661
PF01437.15.fs: domain 2 of 3, from 761 to 813: score 31.5, E = 1e-09
*->nCsq......ytsCssCLaardpfyCgWCssegrCtrgsaytsfyge
+Cs++ + ++t C+sCL+a++ C WCs++++C+++++
KIAA0620 761 DCSRtaqvypHTACTSCLSAQW--PCFWCSQQHSCVSNQS------R 799
Cprse.pendqwldwswssskCp<-*
C+ s +p +s ++Cp
KIAA0620 800 CEASPnP---------TSPQDCP 813
PF01437.15.ls: domain 2 of 3, from 761 to 813: score 33.2, E = 8.4e-07
*->nCsq......ytsCssCLaardpfyCgWCssegrCtrgsaytsfyge
+Cs++ + ++t C+sCL+a++ C WCs++++C+++++
KIAA0620 761 DCSRtaqvypHTACTSCLSAQW--PCFWCSQQHSCVSNQS------R 799
Cprse.pendqwldwswssskCp<-*
C+ s +p +s ++Cp
KIAA0620 800 CEASPnP---------TSPQDCP 813
PF01833.14.ls: domain 1 of 3, from 951 to 1038: score 70.6, E = 4.8e-18
*->PvItsisPssgplsGGteiTitGsnlgsgsePrirkntfededikVt
P I +i+P+sgpl+GGt +Ti+G+nlg + +d + V+
KIAA0620 951 PEIRAIEPLSGPLDGGTLLTIRGRNLG---------RRLSDVAHGVW 988
fggtpvpCdvisssss..tqivCktPpva.ggpsppvvtvsvdgggsgdg
+gg++ C++ ++ + +++ivC+t+p++++ + v+v+ +
KIAA0620 989 IGGVA--CEPLPDRYTvsEEIVCVTGPAPgPLS----GVVTVNASK---- 1028
rssspvtFtY<-*
++ s +F+Y
KIAA0620 1029 EGKSRDRFSY 1038
PF01833.14.fs: domain 1 of 3, from 951 to 1038: score 68.8, E = 3.3e-19
*->PvItsisPssgplsGGteiTitGsnlgsgsePrirkntfededikVt
P I +i+P+sgpl+GGt +Ti+G+nlg + +d + V+
KIAA0620 951 PEIRAIEPLSGPLDGGTLLTIRGRNLG---------RRLSDVAHGVW 988
fggtpvpCdvisssss..tqivCktPpva.ggpsppvvtvsvdgggsgdg
+gg++ C++ ++ + +++ivC+t+p++++ + v+v+ +
KIAA0620 989 IGGVA--CEPLPDRYTvsEEIVCVTGPAPgPLS----GVVTVNASK---- 1028
rssspvtFtY<-*
++ s +F+Y
KIAA0620 1029 EGKSRDRFSY 1038
PF01833.14.ls: domain 2 of 3, from 1041 to 1125: score 71.5, E = 2.5e-18
*->PvItsisPssgplsGGteiTitGsnlgsgsePrirkntfededikVt
P ++s++P+ gp++GGt+iTi+G +l gs ++V+
KIAA0620 1041 PLVHSLEPTMGPKAGGTRITIHGNDLHVGS------------ELQVL 1075
fggtpvpCdvissssstqivCktPpva.ggpsppvvtvsvdgggsgdgrs
+++t+ pC+ +++ t+i C+ P++a + p+p v v + + g +
KIAA0620 1076 VNDTD-PCTELMRTD-TSIACTMPEGAlPAPVP--VCVRFERRG----CV 1117
sspvtFtY<-*
+ tF Y
KIAA0620 1118 HGNLTFWY 1125
PF01833.14.fs: domain 2 of 3, from 1041 to 1125: score 69.7, E = 1.8e-19
*->PvItsisPssgplsGGteiTitGsnlgsgsePrirkntfededikVt
P ++s++P+ gp++GGt+iTi+G +l gs ++V+
KIAA0620 1041 PLVHSLEPTMGPKAGGTRITIHGNDLHVGS------------ELQVL 1075
fggtpvpCdvissssstqivCktPpva.ggpsppvvtvsvdgggsgdgrs
+++t+ pC+ +++ t+i C+ P++a + p+p v v + + g +
KIAA0620 1076 VNDTD-PCTELMRTD-TSIACTMPEGAlPAPVP--VCVRFERRG----CV 1117
sspvtFtY<-*
+ tF Y
KIAA0620 1118 HGNLTFWY 1125
PF01833.14.ls: domain 3 of 3, from 1129 to 1210: score 24.3, E = 0.0004
*->PvItsisPssgplsGGteiTitGsnlgsgsePrirkntfededikVt
PvIt+isP+++p+sGG +iT+ G+ + +++ + V
KIAA0620 1129 PVITAISPRRSPVSGGRTITVAGERFHMVQN----------VSMAVH 1165
fggtpv.pCdvissssstqivCktPpva.ggpsppvvtvsvdgggsgdgr
g++ + C+v +s+ i+C +P + + +p v++ ++g
KIAA0620 1166 HIGREPtLCKVLNSTL---ITCPSPGALsNASAP--VDFFINGRA----- 1205
ssspvtFtY<-*
++
KIAA0620 1206 ----YADEV 1210
PF01833.14.fs: domain 3 of 3, from 1129 to 1187: score 27.6, E = 2.5e-07
*->PvItsisPssgplsGGteiTitGsnlgsgsePrirkntfededikVt
PvIt+isP+++p+sGG +iT+ G+ + +++ + V
KIAA0620 1129 PVITAISPRRSPVSGGRTITVAGERFHMVQN----------VSMAVH 1165
fggtpv.pCdvissssstqivCktP<-*
g++ + C+v +s+ i+C +P
KIAA0620 1166 HIGREPtLCKVLNSTL---ITCPSP 1187
PF08337.2.fs: domain 1 of 1, from 1404 to 1948: score 1301.2, E = 0
*->sGiPfLDYktYaeRvFFpk......................pGhedH
+GiPfL+Yk++++R+FFpk ++ +++ ++++ ++++++ +e+H
KIAA0620 1404 QGIPFLEYKHFVTRTFFPKcsslyeeryvlpsqtlnsqgssQAQETH 1450
PvLkdlevpesraptveegLtqFsqLLnNKsFLltfIhTLEsQrsFSvRD
P+L+++++pes++p++eeg+++Fs+LLnNK+FL++f+h+LE+Q++F+vRD
KIAA0620 1451 PLLGEWKIPESCRPNMEEGISLFSSLLNNKHFLIVFVHALEQQKDFAVRD 1500
RvnvASLLmvaLqgKLeYcTdILktLLrdLIeksvesKnnPKLmLRRTES
R+ +ASLL++aL+gKLeY+T+I+k+LL+dLI++s ++K nPKLmLRRTES
KIAA0620 1501 RCSLASLLTIALHGKLEYYTSIMKELLVDLIDAS-AAK-NPKLMLRRTES 1548
VVEKMLTNWmSiCLYdfLKetaGepLflLfkAIKqQieKGPVDAvTgkAR
VVEKMLTNWmSiC+Y++L+et+Gep+flL++AIKqQi+KG++DA+TgkAR
KIAA0620 1549 VVEKMLTNWMSICMYSCLRETVGEPFFLLLCAIKQQINKGSIDAITGKAR 1598
YTLnEekLLReqveykpltlnCVilevqpegdeadgvrnvpVkVLDCDTI
YTLnEe+LLRe++e+kp++ln V+ +q++g+++ +V+ +D+DT+
KIAA0620 1599 YTLNEEWLLRENIEAKPRNLN-VS--FQGCGMDS-----LSVRAMDTDTL 1640
tQVKeKiLdavYkgtPySqRPrvedldLEWrtGrrghliLqDveDvTski
tQVKeKiL+a++k++PySq+Pr+ed+dLEW+ +++++iL+D +D+Ts++
KIAA0620 1641 TQVKEKILEAFCKNVPYSQWPRAEDVDLEWFASSTQSYILRD-LDDTSVV 1689
egglwKRLNTLaHYgVpDGAtlaLvpkqntassynisilStksekstsil
e+g +K+LNTLaHY++p+GA+la+++
KIAA0620 1690 EDG-RKKLNTLAHYKIPEGASLAMSL------------------------ 1714
tdnssryestlrldssddslgsrsdlledgqesGvklwHLVkPtdelveq
+d++d++lg+++dl+++ k++HLV+Ptdel+e+
KIAA0620 1715 ------------IDKKDNTLGRVKDLDTE------KYFHLVLPTDELAEP 1746
kkgkRqslklkeredrkKaipEIYLTRLLstKGTLQKFVDDLFesILSta
kk++Rqs+ rkK++pEIYLTRLLstKGTLQKF+DDLF++ILS+
KIAA0620 1747 KKSHRQSH-------RKKVLPEIYLTRLLSTKGTLQKFLDDLFKAILSI- 1788
HrnsalPlAvKYfFDFLDeqAekhgIsDpDvvHiWKsNsLPLRFWVNiiK
r++++PlAvKYfFDFL+eqAek+gIsDpD++HiWK+NsLPLRFWVNi+K
KIAA0620 1789 -REDKPPLAVKYFFDFLEEQAEKRGISDPDTLHIWKTNSLPLRFWVNILK 1837
NPqFVFDIhKtdsvDAcLSViAQTFMDACStsEhrLGKDSPSNKLLYAKD
NPqFVFDI Ktd++DAcLSViAQ+F+DACS+s+++LGKDSP+NKLLYAK+
KIAA0620 1838 NPQFVFDIDKTDHIDACLSVIAQAFIDACSISDLQLGKDSPTNKLLYAKE 1887
IPrYkkmVerYYkdIrdmppiSdQEMnaaLaeeSrkhsnefntlvALnEL
IP+Y+k V+rYYk+I+dm+p+S+QEMna+LaeeSrk++nefnt+vA+ E+
KIAA0620 1888 IPEYRKIVQRYYKQIQDMTPLSEQEMNAHLAEESRKYQNEFNTNVAMAEI 1937
YkYvkKYrdqI<-*
YkY+k+Yr qI
KIAA0620 1938 YKYAKRYRPQI 1948
PF08337.2.ls: domain 1 of 1, from 1404 to 1948: score 1302.9, E = 0
*->sGiPfLDYktYaeRvFFpk......................pGhedH
+GiPfL+Yk++++R+FFpk ++ +++ ++++ ++++++ +e+H
KIAA0620 1404 QGIPFLEYKHFVTRTFFPKcsslyeeryvlpsqtlnsqgssQAQETH 1450
PvLkdlevpesraptveegLtqFsqLLnNKsFLltfIhTLEsQrsFSvRD
P+L+++++pes++p++eeg+++Fs+LLnNK+FL++f+h+LE+Q++F+vRD
KIAA0620 1451 PLLGEWKIPESCRPNMEEGISLFSSLLNNKHFLIVFVHALEQQKDFAVRD 1500
RvnvASLLmvaLqgKLeYcTdILktLLrdLIeksvesKnnPKLmLRRTES
R+ +ASLL++aL+gKLeY+T+I+k+LL+dLI++s ++K nPKLmLRRTES
KIAA0620 1501 RCSLASLLTIALHGKLEYYTSIMKELLVDLIDAS-AAK-NPKLMLRRTES 1548
VVEKMLTNWmSiCLYdfLKetaGepLflLfkAIKqQieKGPVDAvTgkAR
VVEKMLTNWmSiC+Y++L+et+Gep+flL++AIKqQi+KG++DA+TgkAR
KIAA0620 1549 VVEKMLTNWMSICMYSCLRETVGEPFFLLLCAIKQQINKGSIDAITGKAR 1598
YTLnEekLLReqveykpltlnCVilevqpegdeadgvrnvpVkVLDCDTI
YTLnEe+LLRe++e+kp++ln V+ +q++g+++ +V+ +D+DT+
KIAA0620 1599 YTLNEEWLLRENIEAKPRNLN-VS--FQGCGMDS-----LSVRAMDTDTL 1640
tQVKeKiLdavYkgtPySqRPrvedldLEWrtGrrghliLqDveDvTski
tQVKeKiL+a++k++PySq+Pr+ed+dLEW+ +++++iL+D +D+Ts++
KIAA0620 1641 TQVKEKILEAFCKNVPYSQWPRAEDVDLEWFASSTQSYILRD-LDDTSVV 1689
egglwKRLNTLaHYgVpDGAtlaLvpkqntassynisilStksekstsil
e+g +K+LNTLaHY++p+GA+la+++
KIAA0620 1690 EDG-RKKLNTLAHYKIPEGASLAMSL------------------------ 1714
tdnssryestlrldssddslgsrsdlledgqesGvklwHLVkPtdelveq
+d++d++lg+++dl+++ k++HLV+Ptdel+e+
KIAA0620 1715 ------------IDKKDNTLGRVKDLDTE------KYFHLVLPTDELAEP 1746
kkgkRqslklkeredrkKaipEIYLTRLLstKGTLQKFVDDLFesILSta
kk++Rqs+ rkK++pEIYLTRLLstKGTLQKF+DDLF++ILS+
KIAA0620 1747 KKSHRQSH-------RKKVLPEIYLTRLLSTKGTLQKFLDDLFKAILSI- 1788
HrnsalPlAvKYfFDFLDeqAekhgIsDpDvvHiWKsNsLPLRFWVNiiK
r++++PlAvKYfFDFL+eqAek+gIsDpD++HiWK+NsLPLRFWVNi+K
KIAA0620 1789 -REDKPPLAVKYFFDFLEEQAEKRGISDPDTLHIWKTNSLPLRFWVNILK 1837
NPqFVFDIhKtdsvDAcLSViAQTFMDACStsEhrLGKDSPSNKLLYAKD
NPqFVFDI Ktd++DAcLSViAQ+F+DACS+s+++LGKDSP+NKLLYAK+
KIAA0620 1838 NPQFVFDIDKTDHIDACLSVIAQAFIDACSISDLQLGKDSPTNKLLYAKE 1887
IPrYkkmVerYYkdIrdmppiSdQEMnaaLaeeSrkhsnefntlvALnEL
IP+Y+k V+rYYk+I+dm+p+S+QEMna+LaeeSrk++nefnt+vA+ E+
KIAA0620 1888 IPEYRKIVQRYYKQIQDMTPLSEQEMNAHLAEESRKYQNEFNTNVAMAEI 1937
YkYvkKYrdqI<-*
YkY+k+Yr qI
KIAA0620 1938 YKYAKRYRPQI 1948
//