hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/smart.HMMs.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-08165597/chunk_1/iprscan-20080502-08165597.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA0620 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- SM00630 354.7 5.8e-102 1 SM00429 246.4 2.3e-69 3 SM00423 100.9 1.5e-25 3 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- SM00630 1/1 119 589 .. 1 532 [] 354.7 5.8e-102 SM00423 1/3 608 661 .. 1 56 [] 53.6 2.7e-11 SM00423 2/3 761 813 .. 1 56 [] 34.2 1.8e-05 SM00423 3/3 908 949 .. 1 56 [] 13.2 1.9 SM00429 1/3 950 1039 .. 1 111 [] 88.8 6.6e-22 SM00429 2/3 1040 1126 .. 1 111 [] 90.1 2.6e-22 SM00429 3/3 1128 1207 .. 1 111 [] 67.5 1.7e-15 Alignments of top-scoring domains: SM00630: domain 1 of 1, from 119 to 589: score 354.7, E = 5.8e-102 *->fnhllldedsgierlyVGArNriysLslpnlsllsevvtgpvldwps n+++ld + g ++y++A+Nr+y+Ls++nlsl++e++ gpv d+p KIAA0620 119 TNNFALDGAAG--TVYLAAVNRLYQLSGANLSLEAEAAVGPVPDSPL 163 ceepnekclkceeCaakgkeeCssneteCdNyirvLlvdndhiadthLyv c++p ++++a ++ ++ +++dNy+++L++d+ ++ ++v KIAA0620 164 CHAP-------QLPQASCE----HPRRLTDNYNKILQLDPG---QGLVVV 199 CGTnafgPdVtCrlinlgdlepadesea.edqiltlclyskevnlsesgr CG++++g C+l+++g+ + a ++++ +++++ +v+ ++s+ KIAA0620 200 CGSIYQGF---CQLRRRGNIS------AvAVRFPPAAPPAEPVTVFPSML 240 gkCPydPlgsstsvvvdggvP.gggeLYsgtsadfsg..vals....... +++ ++P+ s++++v +++ gg++L +g +++ +g+++++++++ +++ KIAA0620 241 NVAANHPNASTVGLVLPPAAGaGGSRLLVGATYTGYGssFFPRnrsledh 290 y.sssdpiifRslgtt...qdgfefefhslrttiydskwg.ydlnepnFV + ++++ i +Rsl+t+++ ++ f+f+ +++ +i+ k+g ++ ++ FV KIAA0620 291 RfENTPEIAIRSLDTRgdlAKLFTFDLNPSDDNILKIKQGaKEQHKLGFV 340 yaFeipes.g..dgdfVYFFFrEtaveainrdcssekavvsRVARvCknD +aF +p ++++++++++Y + a+ + ++e++ +s +AR+C+ + KIAA0620 341 SAFLHPSDpPpgAQSYAYLALNSEARAG-----DKESQARSLLARICLPH 385 vGG.qrlLqkkWtSFLKarLnCsvpgkggvrefyFneLQavfllppGaLA G k S+ + L+C + + +g + + L +vf +++ KIAA0620 386 --GaGGDAKKLTESYIQLGLQCAGGAGRG-D--LYSRLVSVFPARE---- 426 relgiesddvlYgVFsqgqqtssrdaanpipgSAVCaFslkdInavFneG +l++VF ++q+++ + A+CaF+++d++a++++ KIAA0620 427 ---------RLFAVFERPQGSPA----ARAAPAALCAFRFADVRAAIRAA 463 pfkcyegpnsawlpvegnkvPyprPGtCisntfregrndssskdlPddvl + +c+ p ++v ++ v P + + + +P+ + KIAA0620 464 RTACFVEPAPDVVAVLDSVVQGTGPACE---------RKLNIQLQPEQLD 504 nfikdhpLmdeavpPltgrPllvktgtdyrlTsiaVdrvrgldGgkneyt +++ + ++++ +Pl ++P++ + + Ts+aV +v++ yt KIAA0620 505 CGAAHLQHPLSILQPLKATPVFRAP--GL--TSVAVASVNN-------YT 543 VlFlGTsdGrvlKvvvsrsssssssaglesvlleelqvfppgsepirdmv +FlGT +Gr+lK+ +++s + v+ ++++ +g+++++ m+ KIAA0620 544 AVFLGTVNGRLLKINLNES---------MQVVSRRVVTVAYGEPVHHVMQ 584 lsskk<-* ++++ KIAA0620 585 FDPAD 589 SM00423: domain 1 of 3, from 608 to 661: score 53.6, E = 2.7e-11 *->rCsqygvtsCseCllardpygCgWCssegrCtrgerCderrgsrqnw C+++ ++C++C++a d y CgWC++e rCt +++C+++++ + w KIAA0620 608 ACNVH--STCGDCVGAADAY-CGWCALETRCTLQQDCTNSSQ-QHFW 650 ssg..pssqCp<-* +s++++ s Cp KIAA0620 651 TSAseGPSRCP 661 SM00423: domain 2 of 3, from 761 to 813: score 34.2, E = 1.8e-05 *->rCsqygv....tsCseCllardpygCgWCssegrCtrg.erCderrg +Cs+ ++ ++t C++Cl+a++p C WCs ++ C++ ++rC KIAA0620 761 DCSRTAQvyphTACTSCLSAQWP--CFWCSQQHSCVSNqSRCEA--- 802 srqnwssgpssqCp<-* s+ + s + Cp KIAA0620 803 SPNPTSP---QDCP 813 SM00423: domain 3 of 3, from 908 to 949: score 13.2, E = 1.9 *->rCsqygvtsCseCllardpyg.CgWCssegrCtrgerCderrgsrqn +C+ ++ ++Cs+Cl+++d + C+W C rg++q+ KIAA0620 908 NCAMGS-PDCSQCLGREDLGHlCMWSD---------GCRL-RGPLQP 943 wssgpssqCp<-* + +Cp KIAA0620 944 MAG----TCP 949 SM00429: domain 1 of 3, from 950 to 1039: score 88.8, E = 6.6e-22 *->dPvItrisPssGplsGGteritlcGknLdsdgsvvfvrvgvgGrvWe P+I +i+P sGpl GGt ++t++G+nL+ + s+v + v g + KIAA0620 950 APEIRAIEPLSGPLDGGT-LLTIRGRNLGRRLSDVAHGVWIG----G 991 vpCtflpsdvhGkdsstaivCrtPpylnqspgpgsvpvrvtgevgfdngg v+C++lp+ + s++ivC+t+p++ gp s+ v +v +++ KIAA0620 992 VACEPLPDRYT---VSEEIVCVTGPAP----GPLSGVV----TVNA-SKE 1029 vrtelsppspFtYv<-* + + +F+Yv KIAA0620 1030 GKS----RDRFSYV 1039 SM00429: domain 2 of 3, from 1040 to 1126: score 90.1, E = 2.6e-22 *->dPvItrisPssGplsGGteritlcGknLdsdgsvvfvrvgvgGrvWe +P +++++P+ Gp++GGt rit++G++L++ gs+ v v++ KIAA0620 1040 LPLVHSLEPTMGPKAGGT-RITIHGNDLHV-GSELQVLVNDT----- 1079 vpCtflpsdvhGkdsstaivCrtPpylnqspgpgsvpvrvtgevgf.dng pCt l++ +t+i C++P+++ +p++vpv +v f+++g KIAA0620 1080 DPCTELMR------TDTSIACTMPEGA----LPAPVPV----CVRFeRRG 1115 gvrtelsppspFtYv<-* v++ +++F Y+ KIAA0620 1116 CVHG----NLTFWYM 1126 SM00429: domain 3 of 3, from 1128 to 1207: score 67.5, E = 1.7e-15 *->dPvItrisPssGplsGGteritlcGknLdsdgsvvfvrvgvgGr.vW +PvIt+isP+++p+sGG+ +it+ G +++ ++ v++ v+ Gr+ KIAA0620 1128 NPVITAISPRRSPVSGGR-TITVAGERFHM-VQNVSMAVHHIGReP- 1171 evpCtflpsdvhGkdsstaivCrtPpylnqspgpgsvpvrvtgevgfdng + C++l+s t i+C +P +l +++s+pv +++ KIAA0620 1172 -TLCKVLNS--------TLITCPSPGAL----SNASAPV----DFFI--- 1201 gvrtelsppspFtYv<-* ++r+ Y KIAA0620 1202 NGRA---------YA 1207 //