HUGE

Gene/Protein Characteristic Table for KIAA0634

Link to : Rouge \| GTOP \| SWISS-PROT/TrEMBL \| GeneCards\| RefDIC
Features : DNA sequence \| Protein sequence \| Expression \| Mapping

Product ID :	ORK00582
Accession No. :	AB014534
Description :	astrotactin 2 isoform a.
HUGO Gene Name :	astrotactin 2 (ASTN2)
Clone Name :	hj03064 [Vector Info]
Flexi ORF Clone :	pF1KSDA0634
Source :	Human adult brain

Features of the cloned DNA sequence	Description

Length: 4591 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis) for :
cloned DNA seq.
Warning for N-terminal truncation:
YES

Warning for coding interruption:
NO

Integrity of 3' end

Length of 3'UTR 623 bp

Genome contig ID gi89161216r_118127328
PolyA signal sequence
(ATTAAA,-23)
+----*----+----*----+----*----+----
GCCTGTCCATGCATTAAAAATTCCTATTGTCTCTC
Flanking genome sequence
(100000 - 99951)
----+----*----+----*----+----*----+----*----+----*
TTTCTGCTTGGGTGGTATTTCTTACCAAGGGAATGTGCTTGAGAGACCTC

Ensembl ContigView (Add our DAS server as a DAS source)

Chr f/r start end exon identity class

ContigView(URL based/DAS) 9 r 118227328 119217138 22 99.7 Perfect prediction

Features of the protein sequence	Description

Length: 1321 aa

Result of homology search against nr database (FASTA output, Multiple alignment)

Entry	ID%	Protein	Source
CAH72264	100.0	astrotactin 2 [...	Homo sapiens
NP_062387	97.0	astrotactin 2 i...	Mus musculus
O75129	96.2	Astrotactin-2; ...	Homo sapiens
XP_528403	94.6	astrotactin 2 [...	Pan troglodytes
XP_001098403	95.4	similar to astr...	Macaca mulatta

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of homology search against other HUGE database (FASTA output, Multiple alignment)

Entry	Exp	ID%	HUGE_ID
AB006627	6.5e-142	48.9	KIAA0289

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of motif / domain search (InterProScan and SOSUI)

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Result of InterProScan

Search method interpro_ID From To Entry Definition

HMMPfam IPR003961 1048 1164 PF00041 Fibronectin

HMMSmart IPR001862 833 1017 SM00457 Membrane attack complex component/perforin/complement C9

Search method	interpro_ID	From	To	Entry	Definition
HMMPfam	IPR003961	1048	1164	PF00041	Fibronectin
HMMSmart	IPR001862	833	1017	SM00457	Membrane attack complex component/perforin/complement C9

Prediction of transmembrane (TM) segments

Method No. N terminal transmembrane region C terminal type length

SOSUI2 1 2 ASASAVSAAASSSSFATAATAAA 24 SECONDARY 23

2 236 HILHISVMGGLIALLLLLLVFTV 258 PRIMARY 23

3 415 NKTALTLIAVSSCILAMVCGSQ 436 PRIMARY 22

Method	No.	N terminal	transmembrane region	C terminal	type	length
SOSUI2	1	2	ASASAVSAAASSSSFATAATAAA	24	SECONDARY	23
2	236	HILHISVMGGLIALLLLLLVFTV	258	PRIMARY	23
3	415	NKTALTLIAVSSCILAMVCGSQ	436	PRIMARY	22

Expression profile	Description

: RT-PCR Description
: RT-PCR-ELISA Description
: Experimental conditions

Primer_f
: CTATGGAGGGACAGTTTTGAC

Primer_r
: GGTCCCACAAACTCAATAATG

PCR conditions
: 95 °C30 sec55 °C30 sec72 °C60 sec30 cycles

RT-PCR	Description

RT-PCR-ELISA	Description

RH mapping information	Description

Chromosome No.

: 9

Experimental conditions

Panel name	: GeneBridge 4
Primer_f	: CTATGGAGGGACAGTTTTGAC
Primer_r	: GGTCCCACAAACTCAATAATG
PCR product length	: 155 bp
PCR conditions	: 95 °C15 sec62 °C60 sec30 cycles

How to obtain KIAA clone(s) Back to the HUGE Protein Database homepage

	cloned DNA seq.
Warning for N-terminal truncation:	YES
Warning for coding interruption:	NO

Length of 3'UTR	623 bp
Genome contig ID	gi89161216r_118127328
PolyA signal sequence (ATTAAA,-23)	+--------+--------+----*----+---- GCCTGTCCATGCATTAAAAATTCCTATTGTCTCTC
Flanking genome sequence (100000 - 99951)	----+--------+--------+--------+--------+----* TTTCTGCTTGGGTGGTATTTCTTACCAAGGGAATGTGCTTGAGAGACCTC

	Chr	f/r	start	end	exon	identity	class
ContigView(URL based/DAS)	9	r	118227328	119217138	22	99.7	Perfect prediction

Gene/Protein Characteristic Table for KIAA0634

Features of the cloned DNA sequence

Features of the protein sequence

Expression profile

RH mapping information