# /usr/local/bin/fasta34 -b50 -d10 -E0.01 -H -O./tmp/hj03347s1.fasta.huge -Q ../query/KIAA0638.ptfa ./tmplib.23663 2
FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 KIAA0638, 1384 aa
 vs ./tmplib.23663 library

1986121 residues in  2037 sequences
  Expectation_n fit: rho(ln(x))= 15.4980+/-0.0124; mu= -34.1651+/- 0.835
 mean_var=676.3402+/-164.982, 0's: 0 Z-trim: 5  B-trim: 5 in 1/39
 Lambda= 0.049316

FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 40, opt: 28, open/ext: -10/-2, width:  16
The best scores are:                                      opt bits E(2037)
KIAA1590  ( 1393 res)   fj09048y1                  (1393)  324 39.2  0.0062


>>KIAA1590  ( 1393 res)   fj09048y1                       (1393 aa)
 initn: 378 init1: 116 opt: 324  Z-score: 144.6  bits: 39.2 E(): 0.0062
Smith-Waterman score: 324;  37.143% identity (69.286% similar) in 140 aa overlap (21-155:429-568)

                         10        20        30        40        50
KIAA06           ELWSLRTMDALNRNQIGPGCQTQTMVQKGPLDLIETGKGLKVQTDKPHLV
                                     .::.....  : : . : :. .... :::.
KIAA15 SPTALSMEEKLQQNEARVQELTKEWTNKWNETQNILKEQTLALRKEGIGVVLDSELPHLI
      400       410       420       430       440       450        

               60        70            80        90       100      
KIAA06 SLGSGRLSTAITLLPLEEGRTVIG----SAARDISLQGPGLAPEHCYIENLRGTLTLYP-
       .. .  :::.: :  :.::.: .:    :. .:: :.:  :  ::: .::. ::.:: : 
KIAA15 GIDDDLLSTGIILYHLKEGQTYVGRDDASTEQDIVLHGLDLESEHCIFENIGGTVTLIPL
      460       470       480       490       500       510        

         110       120       130       140       150       160     
KIAA06 CGNACTIDGLPVRQPTRLTQGCMLCLGQSTFLRFNHPAEAKWMKSMIPAGGRAPGPPYSP
        :. :...:. . . :.:.:: .. ::.....::::: ::  ..    .:          
KIAA15 SGSQCSVNGVQIVEATHLNQGAVILLGRTNMFRFNHPKEAAKLREKRKSGLLSSFSLSMT
      520       530       540       550       560       570        

         170       180       190       200       210       220     
KIAA06 VPAESESLVNGNHTPQTATRGPSACASHSSLVSSIEKDLQEIMDSLVLEEPGAAGKKPAA
                                                                   
KIAA15 DLSKSRENLSAVMLYNPGLEFERQQREELEKLESKRKLIEEMEEKQKSDKAELERMQQEV
      580       590       600       610       620       630        




1384 residues in 1 query   sequences
1986121 residues in 2037 library sequences
 Scomplib [34.26]
 start: Thu Dec 18 15:10:14 2008 done: Thu Dec 18 15:10:14 2008
 Total Scan time:  0.840 Total Display time:  0.040

Function used was FASTA [version 34.26.5 April 26, 2007]