hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/smart.HMMs.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-08480237/chunk_1/iprscan-20080502-08480237.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA0638 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- SM00233 71.5 1.1e-16 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- SM00233 1/1 1264 1379 .. 1 82 [] 71.5 1.1e-16 Alignments of top-scoring domains: SM00233: domain 1 of 1, from 1264 to 1379: score 71.5, E = 1.1e-16 *->vikeGwLlkks..k.swkkryfvLfn..gvLlyyksk...kpkgsip +++G+L k++++ +swkkr+fv+++ +++L+yy +k+++k+kg+i KIAA0638 1264 KVCRGYLVKMGgkIkSWKKRWFVFDRlkRTLSYYVDKhetKLKGVIY 1310 Lsgc.svre.p.......................cFeivt.drtlllqAe + +++v+ ++ ++ +++ + +++++ +F+++t+dr +++ A+ KIAA0638 1311 FQAIeEVYYdHlrsaakkrffrftmvtespnpalTFCVKThDRLYYMVAP 1360 seeereeWvealqsaiaka<-* s+e ++ W++ + ++ + KIAA0638 1361 SAEAMRIWMDVIVTGAEGY 1379 //