hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-08493921/chunk_1/iprscan-20080502-08493921.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA0639 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00225.13.ls Kinesin motor domain 575.5 4.8e-170 1 PF00225.13.fs Kinesin motor domain 573.8 1.5e-169 1 PF01302.15.ls CAP-Gly domain 125.4 1.5e-34 1 PF01302.15.fs CAP-Gly domain 123.5 5.5e-34 1 PF00498.16.fs FHA domain 45.9 5.7e-13 1 PF00498.16.ls FHA domain 47.6 3.8e-11 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00225.13.fs 1/1 20 363 .. 1 424 [] 573.8 1.5e-169 PF00225.13.ls 1/1 20 363 .. 1 424 [] 575.5 4.8e-170 PF00498.16.ls 1/1 480 544 .. 1 94 [] 47.6 3.8e-11 PF00498.16.fs 1/1 480 544 .. 1 94 [] 45.9 5.7e-13 PF01302.15.fs 1/1 1712 1777 .. 1 74 [] 123.5 5.5e-34 PF01302.15.ls 1/1 1712 1777 .. 1 74 [] 125.4 1.5e-34 Alignments of top-scoring domains: PF00225.13.fs: domain 1 of 1, from 20 to 363: score 573.8, E = 1.5e-169 *->RvRPlnerEksrgssdvvnv........sedvessvitn.gkektFt R+RP+n rE+ ++vv+v+ ++ ++ +++ s+++++g++k F KIAA0639 20 RIRPMNRRETDLHTKCVVDVdankvilnPVNTNLSKGDArGQPKVFA 66 FDkVFdp.eatQelse.p.YAsqefvyestakplvesvleGyNvtIFAYG +D++F++ + + +++YA+q+ v+ +++ +++++++GyN++IFAYG KIAA0639 67 YDHCFWSmDES----VkEkYAGQDIVFKCLGENILQNAFDGYNACIFAYG 112 QTGSGKTYTMeGstdsdksspnpsdsCttpeeepGiiPRaledlFeriee QTGSGK+YTM+G + ++pG+iPR ++ lFer ++ KIAA0639 113 QTGSGKSYTMMG-----------------TADQPGLIPRLCSGLFERTQK 145 rkerkpvfKPklnekgwellncqetligvsfdtrglsSdlyvedlefsvk ++ + +++f+v+ KIAA0639 146 EENE---------------------------------------EQSFKVE 156 vSylEIYNEkirDLLspsppqrgspskdnekkkkkpLrireDpkrGgkmd vSy+EIYNEk+rDLL+p++ +++ L++re++ G KIAA0639 157 VSYMEIYNEKVRDLLDPKG------------SRQT-LKVREHSVLG---- 189 gvyVkGLteveVtsaeevlelLelGnknRtvasTkmNeeSSRSHaiFtit +yV GL+ Vts+ ++ +l+ +Gnk+Rtva+T+mNeeSSRSHa+F it KIAA0639 190 -PYVDGLSKLAVTSYKDIESLMSEGNKSRTVAATNMNEESSRSHAVFKIT 238 veqrntdttgsvvtgkdnsgeesvrvskLnLVDLAGSERaskTgatgAgg ++ + + s + g+ +v+kL+LVDLAGSERa kTg A g KIAA0639 239 LTHT-LYDVKSGTSGE--------KVGKLSLVDLAGSERATKTG---AAG 276 rRLkEaanINkSLsaLGnVInALadnq....kssHiPYRDSKLTrLLQDS +RLkE++nINkSL +LG VI+ALad++ +++k++++PYRDS+LT+LL+DS KIAA0639 277 DRLKEGSNINKSLTTLGLVISALADQSagknKNKFVPYRDSVLTWLLKDS 326 LGGGDNsKTlMIaniSPsssrNntnyeETLsTLrFAsRAKnIk<-* LGG NsKT+M+a++SP+++ ny+ETLsTLr+A+RAK+I+ KIAA0639 327 LGG--NSKTAMVATVSPAAD----NYDETLSTLRYADRAKHIV 363 PF00225.13.ls: domain 1 of 1, from 20 to 363: score 575.5, E = 4.8e-170 *->RvRPlnerEksrgssdvvnv........sedvessvitn.gkektFt R+RP+n rE+ ++vv+v+ ++ ++ +++ s+++++g++k F KIAA0639 20 RIRPMNRRETDLHTKCVVDVdankvilnPVNTNLSKGDArGQPKVFA 66 FDkVFdp.eatQelse.p.YAsqefvyestakplvesvleGyNvtIFAYG +D++F++ + + +++YA+q+ v+ +++ +++++++GyN++IFAYG KIAA0639 67 YDHCFWSmDES----VkEkYAGQDIVFKCLGENILQNAFDGYNACIFAYG 112 QTGSGKTYTMeGstdsdksspnpsdsCttpeeepGiiPRaledlFeriee QTGSGK+YTM+G + ++pG+iPR ++ lFer ++ KIAA0639 113 QTGSGKSYTMMG-----------------TADQPGLIPRLCSGLFERTQK 145 rkerkpvfKPklnekgwellncqetligvsfdtrglsSdlyvedlefsvk ++ + +++f+v+ KIAA0639 146 EENE---------------------------------------EQSFKVE 156 vSylEIYNEkirDLLspsppqrgspskdnekkkkkpLrireDpkrGgkmd vSy+EIYNEk+rDLL+p++ +++ L++re++ G KIAA0639 157 VSYMEIYNEKVRDLLDPKG------------SRQT-LKVREHSVLG---- 189 gvyVkGLteveVtsaeevlelLelGnknRtvasTkmNeeSSRSHaiFtit +yV GL+ Vts+ ++ +l+ +Gnk+Rtva+T+mNeeSSRSHa+F it KIAA0639 190 -PYVDGLSKLAVTSYKDIESLMSEGNKSRTVAATNMNEESSRSHAVFKIT 238 veqrntdttgsvvtgkdnsgeesvrvskLnLVDLAGSERaskTgatgAgg ++ + + s + g+ +v+kL+LVDLAGSERa kTg A g KIAA0639 239 LTHT-LYDVKSGTSGE--------KVGKLSLVDLAGSERATKTG---AAG 276 rRLkEaanINkSLsaLGnVInALadnq....kssHiPYRDSKLTrLLQDS +RLkE++nINkSL +LG VI+ALad++ +++k++++PYRDS+LT+LL+DS KIAA0639 277 DRLKEGSNINKSLTTLGLVISALADQSagknKNKFVPYRDSVLTWLLKDS 326 LGGGDNsKTlMIaniSPsssrNntnyeETLsTLrFAsRAKnIk<-* LGG NsKT+M+a++SP+++ ny+ETLsTLr+A+RAK+I+ KIAA0639 327 LGG--NSKTAMVATVSPAAD----NYDETLSTLRYADRAKHIV 363 PF00498.16.ls: domain 1 of 1, from 480 to 544: score 47.6, E = 3.8e-11 *->vtiGRdsdsddilldddqdiqldg.siSrrHaeieykdggvglelaf ++iG+ +++qdiql g +i ++H+ i +++g+ KIAA0639 480 TLIGS---------ANSQDIQLCGmGILPEHCIIDITSEGQV----- 512 rpaqvkefgvylrDlssknlnGatfvNgkrlgngepvrLksGdvirlG<- l++++++ tfvNg + + p++L++Gd+i++G KIAA0639 513 ----------MLTPQKNTR----TFVNGSSV--SSPIQLHHGDRILWG 544 * KIAA0639 - - PF00498.16.fs: domain 1 of 1, from 480 to 544: score 45.9, E = 5.7e-13 *->vtiGRdsdsddilldddqdiqldg.siSrrHaeieykdggvglelaf ++iG+ +++qdiql g +i ++H+ i +++g+ KIAA0639 480 TLIGS---------ANSQDIQLCGmGILPEHCIIDITSEGQV----- 512 rpaqvkefgvylrDlssknlnGatfvNgkrlgngepvrLksGdvirlG<- l++++++ tfvNg + + p++L++Gd+i++G KIAA0639 513 ----------MLTPQKNTR----TFVNGSSV--SSPIQLHHGDRILWG 544 * KIAA0639 - - PF01302.15.fs: domain 1 of 1, from 1712 to 1777: score 123.5, E = 5.5e-34 *->iGsRVevggggeedrrGtVRYvGetdfapGtniWvGVELDePlrGKN G++V vg + ++G+VRYvG+ df++Gt WvGVELD P+ GKN KIAA0639 1712 EGEFVTVGAH----KTGVVRYVGPADFQEGT--WVGVELDLPS-GKN 1751 DGsvkGvrYFqCegpkyGiFvrpskve<-* DGs++G++YF C p+yG++vrps+v+ KIAA0639 1752 DGSIGGKQYFRCN-PGYGLLVRPSRVR 1777 PF01302.15.ls: domain 1 of 1, from 1712 to 1777: score 125.4, E = 1.5e-34 *->iGsRVevggggeedrrGtVRYvGetdfapGtniWvGVELDePlrGKN G++V vg + ++G+VRYvG+ df++Gt WvGVELD P+ GKN KIAA0639 1712 EGEFVTVGAH----KTGVVRYVGPADFQEGT--WVGVELDLPS-GKN 1751 DGsvkGvrYFqCegpkyGiFvrpskve<-* DGs++G++YF C p+yG++vrps+v+ KIAA0639 1752 DGSIGGKQYFRCN-PGYGLLVRPSRVR 1777 //