hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-08512175/chunk_1/iprscan-20080502-08512175.nocrc
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Query sequence: KIAA0640
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00169.19.fs PH domain                                       82.9    9.3e-25   1
PF00169.19.ls PH domain                                       84.9    2.4e-22   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00169.19.fs   1/1     229   324 ..     1    92 []    82.9  9.3e-25
PF00169.19.ls   1/1     229   324 ..     1    92 []    84.9  2.4e-22

Alignments of top-scoring domains:
PF00169.19.fs: domain 1 of 1, from 229 to 324: score 82.9, E = 9.3e-25
                   *->vikeGwLlkkg.gkkswkkRyfvLfddvLlyykdkk.kkpkgsipLs
                      v k+G+++kkg+++k+w +R+fvL+++ ++yy +++ k++kg i L+
    KIAA0640   229    VLKQGYMMKKGhRRKNWTERWFVLKPNIISYYVSEDlKDKKGDILLD 275  

                   gi.qvtkvpdn.krkncFeirt.dretlllqaeseeerkeWvkaiqsair
                   +   v+ +pd +++k+ F +++ d+ t++++a++++ ++eW++ai+s i+
    KIAA0640   276 ENcCVESLPDKdGKKCLFLVKCfDK-TFEISASDKKKKQEWIQAIHSTIH 324  

                   <-*
                      
    KIAA0640     -     -    

PF00169.19.ls: domain 1 of 1, from 229 to 324: score 84.9, E = 2.4e-22
                   *->vikeGwLlkkg.gkkswkkRyfvLfddvLlyykdkk.kkpkgsipLs
                      v k+G+++kkg+++k+w +R+fvL+++ ++yy +++ k++kg i L+
    KIAA0640   229    VLKQGYMMKKGhRRKNWTERWFVLKPNIISYYVSEDlKDKKGDILLD 275  

                   gi.qvtkvpdn.krkncFeirt.dretlllqaeseeerkeWvkaiqsair
                   +   v+ +pd +++k+ F +++ d+ t++++a++++ ++eW++ai+s i+
    KIAA0640   276 ENcCVESLPDKdGKKCLFLVKCfDK-TFEISASDKKKKQEWIQAIHSTIH 324  

                   <-*
                      
    KIAA0640     -     -    

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