hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-09011505/chunk_1/iprscan-20080502-09011505.nocrc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query sequence: KIAA0646
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00498.16.fs FHA domain                                      57.0    3.2e-16   1
PF00498.16.ls FHA domain                                      58.7    1.7e-14   1
PF00097.15.fs Zinc finger, C3HC4 type (RING finger)           38.0    6.3e-13   1
PF00097.15.ls Zinc finger, C3HC4 type (RING finger)           39.7      9e-09   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00498.16.fs   1/1      39   110 ..     1    94 []    57.0  3.2e-16
PF00498.16.ls   1/1      39   110 ..     1    94 []    58.7  1.7e-14
PF00097.15.fs   1/1     404   441 ..     1    50 []    38.0  6.3e-13
PF00097.15.ls   1/1     404   441 ..     1    50 []    39.7    9e-09

Alignments of top-scoring domains:
PF00498.16.fs: domain 1 of 1, from 39 to 110: score 57.0, E = 3.2e-16
                   *->vtiGRdsdsddilldddqdiqldg.siSrrHaeieykdggvglelaf
                      vt+GR+ + +  l+ + +        iSr+H++++ +++g++     
    KIAA0646    39    VTVGRGFGVTYQLVSKIC-----PlMISRNHCVLKQNPEGQW----- 75   

                   rpaqvkefgvylrDlssknlnGatfvNgkrlgngepvrLksGdvirlG<-
                             ++ D +s+n  G +++N+ rl +++ + +++Gd i+lG  
    KIAA0646    76 ----------TIMDNKSLN--G-VWLNRARLEPLRVYSIHQGDYIQLG   110  

                   *
                    
    KIAA0646     -   -    

PF00498.16.ls: domain 1 of 1, from 39 to 110: score 58.7, E = 1.7e-14
                   *->vtiGRdsdsddilldddqdiqldg.siSrrHaeieykdggvglelaf
                      vt+GR+ + +  l+ + +        iSr+H++++ +++g++     
    KIAA0646    39    VTVGRGFGVTYQLVSKIC-----PlMISRNHCVLKQNPEGQW----- 75   

                   rpaqvkefgvylrDlssknlnGatfvNgkrlgngepvrLksGdvirlG<-
                             ++ D +s+n  G +++N+ rl +++ + +++Gd i+lG  
    KIAA0646    76 ----------TIMDNKSLN--G-VWLNRARLEPLRVYSIHQGDYIQLG   110  

                   *
                    
    KIAA0646     -   -    

PF00097.15.fs: domain 1 of 1, from 404 to 441: score 38.0, E = 6.3e-13
                   *->CrICleelkepsndfplilpCgHsGslkyfCrsClerwlsssgnttC
                      C IC e+++e++     +l C Hs     fC+ C+ +w +  ++  C
    KIAA0646   404    CIICSEYFIEAV-----TLNCAHS-----FCSYCINEWMK--RKIEC 438  

                   plC<-*
                   p+C   
    KIAA0646   439 PIC    441  

PF00097.15.ls: domain 1 of 1, from 404 to 441: score 39.7, E = 9e-09
                   *->CrICleelkepsndfplilpCgHsGslkyfCrsClerwlsssgnttC
                      C IC e+++e++     +l C Hs     fC+ C+ +w +  ++  C
    KIAA0646   404    CIICSEYFIEAV-----TLNCAHS-----FCSYCINEWMK--RKIEC 438  

                   plC<-*
                   p+C   
    KIAA0646   439 PIC    441  

//