hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/smart.HMMs.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-09213286/chunk_1/iprscan-20080502-09213286.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA0657 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- SM00409 270.5 1.3e-76 11 SM00408 181.4 8.8e-50 8 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- SM00409 1/11 2 63 .. 1 58 [] 6.5 37 SM00409 2/11 88 173 .. 1 58 [] 37.4 2e-06 SM00408 1/8 94 162 .. 1 56 [] 33.9 2.1e-05 SM00409 3/11 183 263 .. 1 58 [] 30.5 0.00024 SM00408 2/8 189 255 .. 1 56 [] 7.2 0.98 SM00409 4/11 271 347 .. 1 58 [] 21.5 0.12 SM00409 5/11 458 547 .. 1 58 [] 0.8 1.7e+02 SM00409 6/11 559 640 .. 1 58 [] 27.8 0.0015 SM00408 3/8 565 631 .. 1 56 [] 21.5 0.031 SM00409 7/11 650 729 .. 1 58 [] 22.4 0.061 SM00408 4/8 656 722 .. 1 56 [] 15.8 0.12 SM00409 8/11 741 820 .. 1 58 [] 30.3 0.00026 SM00408 5/8 747 813 .. 1 56 [] 38.1 1.2e-06 SM00409 9/11 832 911 .. 1 58 [] 28.7 0.00079 SM00408 6/8 838 904 .. 1 56 [] 18.4 0.066 SM00409 10/11 924 1007 .. 1 58 [] 36.1 4.7e-06 SM00408 7/8 930 996 .. 1 56 [] 30.6 0.00022 SM00409 11/11 1020 1099 .. 1 58 [] 28.4 0.00096 SM00408 8/8 1026 1092 .. 1 56 [] 15.8 0.13 Alignments of top-scoring domains: SM00409: domain 1 of 11, from 2 to 63: score 6.5, E = 37 *->pp.vtvkeGesvtLtC.as....titWyLtI.nvtpeDsesgGtYtC +v + L+ + + +++ ++ L+I +++ Ds G+Y+C KIAA0657 2 MAlDEVWDSSHFALQPgRAedgpGASLALRIlAARLPDS---GVYVC 45 aat..sgsasseqgttLtVl<-* a++ +g a++ g+ L+V+ KIAA0657 46 HARnaHGHAQA--GALLQVH 63 SM00409: domain 2 of 11, from 88 to 173: score 37.4, E = 2e-06 *->pp.vtvkeGesvtLtC.as.....titWy.................. p++ +v+eG ++++C + +++ ++i W+ +++ +++++ +++ KIAA0657 88 PKtFWVNEGKHAKFRCyVMgkpepEIEWHwegrpllpdrrrlmyrdr 134 .....LtI.nvtpeDsesgGtYtCaat..sgsasseqgttLtVl<-* +++ L + ++ D G Y+Caa++++g++ s ++L+V+ KIAA0657 135 dggfvLKVlYCQAKDR---GLYVCAARnsAGQTLS--AVQLHVK 173 SM00408: domain 1 of 8, from 94 to 162: score 33.9, E = 2.1e-05 *->leGqsVtLtCpasgdpvpnItWlk.gkplp............sgstL +eG + ++C + g+p+p+I W +g pl +++++ +++++g L KIAA0657 94 NEGKHAKFRCYVMGKPEPEIEWHWeGRPLLpdrrrlmyrdrdGGFVL 140 tiknvsleDsGlYtCvArNsvg<-* ++ + D+GlY+C ArNs+g KIAA0657 141 KVLYCQAKDRGLYVCAARNSAG 162 SM00409: domain 3 of 11, from 183 to 263: score 30.5, E = 0.00024 *->pp.vtvkeGesvtLtC.as....titWy................... ++v+++e + ++L+C+++++ W++ +++ + ++ + ++ KIAA0657 183 LQdVEGREHGIAVLECkVPnsriPTAWFredqrllpcrkyeqieegt 229 ...LtI.nvtpeDsesgGtYtCaatsgsasseqgttLtVl<-* ++L+I++++++D G+Y C+ + g + +++tV+ KIAA0657 230 vrrLIIhRLKADDD---GIYLCEMR-GRVRT--VANVTVK 263 SM00408: domain 2 of 8, from 189 to 255: score 7.2, E = 0.98 *->leGqsVtLtCpasgdpvpnI..tWlk.gkplp...........sgst +e + ++L+C+ p+ I++ W++++++l + ++ ++ ++++ + KIAA0657 189 REHGIAVLECK---VPNSRIptAWFReDQRLLpcrkyeqieegTVRR 232 LtiknvsleDsGlYtCvArNsvg<-* L i + + +D+G+Y C+ r++v KIAA0657 233 LIIHRLKADDDGIYLCEMRGRVR 255 SM00409: domain 4 of 11, from 271 to 347: score 21.5, E = 0.12 *->pp.vtvkeGesvtLtC.as....titWy................... p+++ v eGe+++L + + + +W++++ + ++++++ + KIAA0657 271 PRkLDVLEGENAVLLVeTLeagvEGRWSrdgeelpvicqsssghmha 317 LtI.nvtpeDsesgGtYtCaatsgsasseqgttLtVl<-* L++++vt+eD+ G+ t + +t L+V+ KIAA0657 318 LVLpGVTREDA---GEVTFSLG--NSRT--TTLLRVK 347 SM00409: domain 5 of 11, from 458 to 547: score 0.8, E = 1.7e+02 *->pp.vtvkeGesvtLtC.as...titWy.................... ++v v Ge+++++ + s+ + tW+ ++ +++ + ++ ++ KIAA0657 458 LEdVQVYDGEDAVFSLdLStiiQGTWFlngeelksnepegqvepgal 504 ............LtI.nvtpeDsesgGtYtCaat.sgsasseqgttLtVl + + +++ +++L+++ v+ +Ds + s + + +++ Lt++ KIAA0657 505 ryrieqkglqhrLILhAVKHQDS------GALVGfSCPGVQ-DSAALTIQ 547 <-* KIAA0657 - - SM00409: domain 6 of 11, from 559 to 640: score 27.8, E = 0.0015 *->pp.vtvkeGesvtLtC.as....titWy................... ++t e+v+LtC+ s + tWy+++++ + + +++ KIAA0657 559 KVsLTFTTSERVVLTCeLSrvdfPATWYkdgqkveesellvvkmdgr 605 ...LtI.nvtpeDsesgGtYtCaatsgsasseqgttLtVl<-* +++L++++++++Ds G++ C+ ++ sa+ g+t++ KIAA0657 606 khrLILpEAKVQDS---GEFECRTEGVSAFF--GVTVQDP 640 SM00408: domain 3 of 8, from 565 to 631: score 21.5, E = 0.031 *->leGqsVtLtCpasgdpvpnItWlk.gkplp...........sgstLt + V+LtC+ + + tW+k+g+++++++ + ++ + +L KIAA0657 565 TTSERVVLTCE-LSRVDFPATWYKdGQKVEesellvvkmdgRKHRLI 610 iknvsleDsGlYtCvArNsvg<-* + ++++ DsG+ +C+ ++ KIAA0657 611 LPEAKVQDSGEFECRTEGVSA 631 SM00409: domain 7 of 11, from 650 to 729: score 22.4, E = 0.061 *->pp.vtvkeGesvtLtC.as....titWy................... v + e v L C++ + ++Wy++++ ++ + ++ KIAA0657 650 HVfVHAITSECVMLACeVDredaPVRWYkdgqeveesdfvvlenegp 696 ...LtI.nvtpeDsesgGtYtCaatsgsasseqgttLtVl<-* +++L+++ +p+D G+++C+a +++ +t+t++ KIAA0657 697 hrrLVLpATQPSDG---GEFQCVAG---DEC-AYFTVTIT 729 SM00408: domain 4 of 8, from 656 to 722: score 15.8, E = 0.12 *->leGqsVtLtCpasgdpvpnItWlk.gkplp...........sgstLt + + V L C+++ ++p ++W+k+g+++++++ ++++ +L KIAA0657 656 ITSECVMLACEVDREDAP-VRWYKdGQEVEesdfvvlenegPHRRLV 701 iknvsleDsGlYtCvArNsvg<-* + +++D G+ +CvA + KIAA0657 702 LPATQPSDGGEFQCVAGDECA 722 SM00409: domain 8 of 11, from 741 to 820: score 30.3, E = 0.00026 *->pp.vtvkeGesvtLtC.as....titWy................... v +++ e+v+LtC+ + +++W++++ ++ ++ ++ KIAA0657 741 KVyVAAVRLERVVLTCeLCrpwaEVRWTkdgeevvespalllqkedt 787 ...LtI.nvtpeDsesgGtYtCaatsgsasseqgttLtVl<-* ++L+++ v++eDs G+Y C+ + s+ ++t+tV+ KIAA0657 788 vrrLVLpAVQLEDS---GEYLCEID--DESA--SFTVTVT 820 SM00408: domain 5 of 8, from 747 to 813: score 38.1, E = 1.2e-06 *->leGqsVtLtCpasgdpvpnItWlk.gkplp...........sgstLt + V+LtC+ +p ++++W+k+g+++ +++ +++++ +L KIAA0657 747 VRLERVVLTCE-LCRPWAEVRWTKdGEEVVespalllqkedTVRRLV 792 iknvsleDsGlYtCvArNsvg<-* + v+leDsG+Y C+ + KIAA0657 793 LPAVQLEDSGEYLCEIDDESA 813 SM00409: domain 9 of 11, from 832 to 911: score 28.7, E = 0.00079 *->pp.vtvkeGesvtLtC.as....titWy................... ++ ++ e v+L C+ s + ++Wy+++ + ++++ KIAA0657 832 EVtLIAVTLECVVLMCeLSredaPVRWYkdgleveesealvlerdgp 878 ...LtI.nvtpeDsesgGtYtCaatsgsasseqgttLtVl<-* + +L+++ ++peD G+++C a ++s+ ++t+tV+ KIAA0657 879 rcrLVLpAAQPEDG---GEFVCDAG--DDSA--FFTVTVT 911 SM00408: domain 6 of 8, from 838 to 904: score 18.4, E = 0.066 *->leGqsVtLtCpasgdpvpnItWlk.gkplp...........sgstLt + V+L C+ ++++ ++W+k+g ++++++ ++++ + +L KIAA0657 838 VTLECVVLMCE-LSREDAPVRWYKdGLEVEesealvlerdgPRCRLV 883 iknvsleDsGlYtCvArNsvg<-* + +++eD G+ +C A KIAA0657 884 LPAAQPEDGGEFVCDAGDDSA 904 SM00409: domain 10 of 11, from 924 to 1007: score 36.1, E = 4.7e-06 *->pp.vtvkeGesvtLtC.as....titWy................... p+++ v +Ge+v+L+C+ s + + W++++++ + + + + ++ KIAA0657 924 PSpLCVAPGEPVVLSCeLSragaPVVWShngrpvqegeglelhaegp 970 ...LtI.nvtpeDsesgGtYtCaat..sgsasseqgttLtVl<-* ++ L I+ + p+++ G YtC+ g s ++t++V KIAA0657 971 rrvLCIqAAGPAHA---GLYTCQSGaaPGAPSL--SFTVQVA 1007 SM00408: domain 7 of 8, from 930 to 996: score 30.6, E = 0.00022 *->leGqsVtLtCpasgdpvpnItWlk.gkplp...........sgstLt +G++V+L C+ + ++ + W ++g p++++++ + + ++ + L KIAA0657 930 APGEPVVLSCE-LSRAGAPVVWSHnGRPVQegeglelhaegPRRVLC 975 iknvsleDsGlYtCvArNsvg<-* i+ + ++++GlYtC+ + g KIAA0657 976 IQAAGPAHAGLYTCQSGAAPG 996 SM00409: domain 11 of 11, from 1020 to 1099: score 28.4, E = 0.00096 *->pp.vtvkeGesvtLtC.as....titWy................... + +v +G++++L + s++++ ++Wy+++ + ++++ + + + KIAA0657 1020 QTrVRSTPGGDLELVVhLSgpggPVRWYkdgerlasqgrvqleqaga 1066 ...LtI.nvtpeDsesgGtYtCaatsgsasseqgttLtVl<-* ++ L++++++ D+ G+Y C a ++s + ++V+ KIAA0657 1067 rqvLRVqGARSGDA---GEYLCDAP--QDSR--IFLVSVE 1099 SM00408: domain 8 of 8, from 1026 to 1092: score 15.8, E = 0.13 *->leGqsVtLtCpasgdpvpnItWlk.gkplp...........sgstLt +G++++L + sg +p ++W+k+g++l+++++ + ++ + ++ L+ KIAA0657 1026 TPGGDLELVVHLSGPGGP-VRWYKdGERLAsqgrvqleqagARQVLR 1071 iknvsleDsGlYtCvArNsvg<-* ++ ++ +D+G+Y C A KIAA0657 1072 VQGARSGDAGEYLCDAPQDSR 1092 //