hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-09263515/chunk_1/iprscan-20080502-09263515.nocrc
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Query sequence: KIAA0660
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF02136.11.ls Nuclear transport factor 2 (NTF2) domain       158.1    2.1e-44   1
PF02136.11.fs Nuclear transport factor 2 (NTF2) domain       156.2    7.9e-44   1
PF00076.12.fs RNA recognition motif. (a.k.a. RRM, RBD, or     55.9    6.6e-15   1
PF00076.12.ls RNA recognition motif. (a.k.a. RRM, RBD, or     55.9    1.3e-13   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF02136.11.fs   1/1      19   141 ..     1   128 []   156.2  7.9e-44
PF02136.11.ls   1/1      19   141 ..     1   128 []   158.1  2.1e-44
PF00076.12.fs   1/1     341   397 ..     1    59 [.    55.9  6.6e-15
PF00076.12.ls   1/1     341   412 ..     1    74 []    55.9  1.3e-13

Alignments of top-scoring domains:
PF02136.11.fs: domain 1 of 1, from 19 to 141: score 156.2, E = 7.9e-44
                   *->vakaFvqqYYaaldagdpeglaalYyadaSvltppGq..dgt.mspv
                      v+++Fv+qYY++l++  pe l+++Y + +S + + G + +g++ + v
    KIAA0660    19    VGREFVRQYYTLLNK-APEYLHRFY-GRNSSYVHGGVdaSGKpQEAV 63   

                   tGleaIneffdsLpfqkiqhlittvDaqptedgaslsdgvlvmVtGeltv
                   +G+ +I+ ++ sL+f+ ++ +i++vDa+     a+lsdgv+v+V+G l +
    KIAA0660    64 YGQNDIHHKVLSLNFSECHTKIRHVDAH-----ATLSDGVVVQVMGLLSN 108  

                   ddfpprrrFsQtFfLapqrqinggyfVlnDifRl<-*
                    ++p  r+F+QtF+Lap+++++++++V+nD+fR+   
    KIAA0660   109 SGQP-ERKFMQTFVLAPEGSVPNKFYVHNDMFRY    141  

PF02136.11.ls: domain 1 of 1, from 19 to 141: score 158.1, E = 2.1e-44
                   *->vakaFvqqYYaaldagdpeglaalYyadaSvltppGq..dgt.mspv
                      v+++Fv+qYY++l++  pe l+++Y + +S + + G + +g++ + v
    KIAA0660    19    VGREFVRQYYTLLNK-APEYLHRFY-GRNSSYVHGGVdaSGKpQEAV 63   

                   tGleaIneffdsLpfqkiqhlittvDaqptedgaslsdgvlvmVtGeltv
                   +G+ +I+ ++ sL+f+ ++ +i++vDa+     a+lsdgv+v+V+G l +
    KIAA0660    64 YGQNDIHHKVLSLNFSECHTKIRHVDAH-----ATLSDGVVVQVMGLLSN 108  

                   ddfpprrrFsQtFfLapqrqinggyfVlnDifRl<-*
                    ++p  r+F+QtF+Lap+++++++++V+nD+fR+   
    KIAA0660   109 SGQP-ERKFMQTFVLAPEGSVPNKFYVHNDMFRY    141  

PF00076.12.fs: domain 1 of 1, from 341 to 397: score 55.9, E = 6.6e-15
                   *->lfVgNLppdtteedLkdlFskfGpiesikivrDttretgrskGfaFV
                      lfVgNLp+d++e +Lk++F  fG +++ +i ++     g+  +f+FV
    KIAA0660   341    LFVGNLPHDIDENELKEFFMSFGNVVELRINTK--GVGGKLPNFGFV 385  

                   eFedeedAekAl<-*
                    F+d+e +++ l   
    KIAA0660   386 VFDDSEPVQRIL    397  

PF00076.12.ls: domain 1 of 1, from 341 to 412: score 55.9, E = 1.3e-13
                   *->lfVgNLppdtteedLkdlFskfGpiesikivrDttretgrskGfaFV
                      lfVgNLp+d++e +Lk++F  fG +++ +i ++     g+  +f+FV
    KIAA0660   341    LFVGNLPHDIDENELKEFFMSFGNVVELRINTK--GVGGKLPNFGFV 385  

                   eFedeedAekAldalnGkelggrelrv<-*
                    F+d+e +++ l a + +  g  +l v   
    KIAA0660   386 VFDDSEPVQRILIAKPIMFRGEVRLNV    412  

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