hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-09295572/chunk_1/iprscan-20080502-09295572.nocrc
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Query sequence: KIAA0662
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00558                                                 172.1    5.6e-47   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00558    1/1     210   366 ..     1   214 []   172.1  5.6e-47

Alignments of top-scoring domains:
SM00558: domain 1 of 1, from 210 to 366: score 172.1, E = 5.6e-47
                   *->lylqqlwnlaklPffeytdpkpksgklnllsdlpkerywedilgpdv
                      +++++++ +++ P              +++ +l+    w+++ +pd+
    KIAA0662   210    FSDTRMSSFVEPP--------------DIVKKLS----WVENYWPDD 238  

                   gk...PkpkpylymGmaEsrgstTpwHiDdydlySvNylhqgagedGKrW
                   ++  +Pk+++y+++ ++   +s+T++HiD+++  ++ ++h+++ge  K++
    KIAA0662   239 ALlakPKVTKYCLICVK---DSYTDFHIDSGG--ASAWYHVLKGE--KTF 281  

                   yliPpedaeklekllkkhgkefhistapdlfkeqpdllihlstwispevl
                   yli+p  a+  +++                        +++ + +s+ ++
    KIAA0662   282 YLIRPASANISLYER-----------------------WRSASNHSEMFF 308  

                   kkrlkeeperPlfqgvpvyrfvQkpGefvfiPpGwyHaVfnlGkfniava
                    ++             ++y++++k+G+++fiP+Gw++a ++++ +++a+a
    KIAA0662   309 ADQV-----------DKCYKCIVKQGQTLFIPSGWIYATLTPV-DCLAFA 346  

                   vNFaspewlpmglrlveelr<-*
                   ++F+++++++m++r++e +r   
    KIAA0662   347 GHFLHSLSVEMQMRAYEVER    366  

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