hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-09313729/chunk_1/iprscan-20080502-09313729.nocrc
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Query sequence: KIAA0663
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model     Description                                   Score    E-value  N 
--------  -----------                                   -----    ------- ---
SM00356                                                  31.1    0.00016   3

Parsed for domains:
Model     Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------  ------- ----- -----    ----- -----      -----  -------
SM00356     1/3       9    34 ..     1    31 []    20.3     0.28
SM00356     2/3      38    62 ..     1    31 []     8.3       10
SM00356     3/3      66    92 ..     1    31 []     2.5       53

Alignments of top-scoring domains:
SM00356: domain 1 of 3, from 9 to 34: score 20.3, E = 0.28
                   *->kyktelCkfFarrGppgyCpyGdrCkfaHpl<-*
                      + + e+C fF  +    +C +Gd+C+f+H +   
    KIAA0663     9    NQG-EDCYFF-FYS---TCTKGDSCPFRHCE    34   

SM00356: domain 2 of 3, from 38 to 62: score 8.3, E = 10
                   *->kyktelCkfFarrGppgyCpyGdrCkfaHpl<-*
                       +  ++C  + + G   +C +   C+f+H +   
    KIAA0663    38    GNE-TVCTLW-QEG---RCFRQ-VCRFRHME    62   

SM00356: domain 3 of 3, from 66 to 92: score 2.5, E = 53
                   *->kyktelCkfFarrGppgyCpyGdrCkfaHpl<-*
                      k+ + +C  + ++  p  C    +C f+H++   
    KIAA0663    66    KRSEIPCY-W-ENQ-PTGCQ-KLNCAFHHNR    92   

//