# /usr/local/bin/fasta34 -b50 -d10 -E0.01 -H -O./tmp/hk02329.fasta.huge -Q ../query/KIAA0668.ptfa ./tmplib.23663 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 KIAA0668, 742 aa vs ./tmplib.23663 library 1986763 residues in 2037 sequences Expectation_n fit: rho(ln(x))= 5.5010+/-0.00683; mu= 15.4300+/- 0.465 mean_var=183.3310+/-43.292, 0's: 0 Z-trim: 2 B-trim: 31 in 2/38 Lambda= 0.094723 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 38, opt: 26, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2037) KIAA0810 ( 824 res) hk05647s1 ( 824) 1036 154.5 3.9e-38 >>KIAA0810 ( 824 res) hk05647s1 (824 aa) initn: 1150 init1: 757 opt: 1036 Z-score: 776.5 bits: 154.5 E(): 3.9e-38 Smith-Waterman score: 1215; 34.496% identity (60.025% similar) in 803 aa overlap (26-740:63-822) 10 20 30 40 50 KIAA06 LRGVPVWAAGAFRFSSGEESTSHLIMSRRSQRL--TRYSQGDDDGSSSSGGSSVA ::::: :: : . :: .. ....:.: : KIAA08 YTYALSSSYSSDALDFETEHKLDPVFDSPRMSRRSLRLATTACTLGDGEAVGADSGTSSA 40 50 60 70 80 90 60 70 80 90 100 KIAA06 GSQSTLFKDSPLRTLK-RKSSNMKRLSPAPQLGPSSDAHTSY-----------YSESLVH : .:. :: : :.:.: . .: ... .:: .. KIAA08 VS----LKNRAARTTKQRRSTNKSAFSINHVSRQVTSSGVSYGGTVSLQDAVTRRPPVLD 100 110 120 130 140 110 120 130 140 KIAA06 ESWFPPRSSLEEL-----HGDANWGE--------DLRVRRRRGTGGSESSRASGLVGRKA :::. ....... :: . :. :. : . .: : : : :: KIAA08 ESWIREQTTVDHFWGLDDDGDLKGGNKAAIQGNGDVGVAAATAHNGFSCSNCSMLSERKD 150 160 170 180 190 200 150 160 170 180 KIAA06 TEDFLGSSSG-----YSSE-----DDYVGYSDVDQQSSSSR----------------LR- . .. : :: . :: : .: . . . :: KIAA08 VLTAHPAAPGPVSRVYSRDRNQKCDDCKGKRHLDAHPGRAGTLWHIWACAGYFLLQILRR 210 220 230 240 250 260 190 200 210 220 230 KIAA06 -----SAVSR-AGSLLWMVATSPGRLFRLLYWWAGTTWYRLTTAASLLDVFVLTRRFSSL .:::: : : ::.....::. ..:: : ::...: : :.::.::: . .. KIAA08 IGAVGQAVSRTAWSALWLAVVAPGKAASGVFWWLGIGWYQFVTLISWLNVFLLTRCLRNI 270 280 290 300 310 320 240 250 260 270 280 KIAA06 KTFLWFLLPL-LLLTCLTY-GAWYFYPYGLQTFHPALVSWWAAKDSRRPDEGWE------ :: .:.:: :::. :. : :. .: :.: .: . . ..: :. . KIAA08 CKFLVLLIPLFLLLAGLSLRGQGNFF-----SFLPVL-NWASMHRTQRVDDPQDVFKPTT 330 340 350 360 370 380 290 300 310 320 330 340 KIAA06 ARDSSPHFQAEQRV-----MSRVHSLERRLEALAAEFSSNWQKEAMRLERLELRQGAPGQ .: ..: .:..... :: :.. : . . . : .. . :..:. : . KIAA08 SRLKQP-LQGDSEAFPWHWMSGVEQQVASLSGQCHHHGENLRELTTLLQKLQARVDQM-E 390 400 410 420 430 440 350 360 370 380 390 400 KIAA06 GGGGGLSHEDTLALLEGLVSRREAALKEDFRRETAARIQEELSALRAEHQQDSEDLFKKI ::..: : .: :.:. . . . : ::. .: : ::.. :. KIAA08 GGAAGPS-----------ASVRDAVGQPPRETDFMAFHQEH--EVRMSHL---EDILGKL 450 460 470 480 410 420 430 440 450 460 KIAA06 VRASQESEARIQQLKSEWQSMTQESFQESSVKELRRLEDQLAGLQQELAALALKQSSVAE . :. . ...: :.. : . :.. . :..:. :: :..::.. ... KIAA08 REKSEAIQKELEQTKQKTISAVGEQLLPT-VEHLQLELDQ---LKSELSSWRHVKTGC-- 490 500 510 520 530 470 480 490 500 510 KIAA06 EVGLLPQQIQAVRDDVESQFPAWISQFLARG--GGGRVGLLQRE--------EMQAQLRE . ..::.. :. : .. .... ::. :::: ..:..::. KIAA08 ------ETVDAVQERVDVQVREMVKLLFSEDQQGGSLEQLLQRFSSQFVSKGDLQTMLRD 540 550 560 570 580 590 520 530 540 550 560 KIAA06 LESKILT----HVAEMQGKSAREAAASLSLTLQKEGVIGVTEEQVHHIVKQALQRYSEDR :. .:: ::. . . ::..: .... :. :.:: :.. ::..::. ::.:. KIAA08 LQLQILRNVTHHVSVTKQLPTSEAVVS---AVSEAGASGITEAQARAIVNSALKLYSQDK 600 610 620 630 640 570 580 590 600 610 620 KIAA06 IGLADYALESGGASVISTRCSETYETKTALLSLFGIPLWYHSQSPRVILQPDVHPGNCWA :..:.::::::.:..::::::::::::::.::::::::: ::::::..:::..:::::: KIAA08 TGMVDFALESGGGSILSTRCSETYETKTALMSLFGIPLWYFSQSPRVVIQPDIYPGNCWA 650 660 670 680 690 700 630 640 650 660 670 680 KIAA06 FQGPQGFAVVRLSARIRPTAVTLEHVPKALSPNSTISSAPKDFAIFGFDEDLQQEGTLLG :.: ::. ::::: :.:.: ::::.::.:::...:::::::::..:.... :.:: ::: KIAA08 FKGSQGYLVVRLSMMIHPAAFTLEHIPKTLSPTGNISSAPKDFAVYGLENEYQEEGQLLG 710 720 730 740 750 760 690 700 710 720 730 740 KIAA06 KFTYDQDGEPIQTFH-FQAPTMATYQVVELRILTNWGHPEYTCIYRFRVHGEPAH .:::::::: .: :. .. : ...:.:::::..:::::::::.::::::::: KIAA08 QFTYDQDGESLQMFQALKRPDDTAFQIVELRIFSNWGHPEYTCLYRFRVHGEPVK 770 780 790 800 810 820 742 residues in 1 query sequences 1986763 residues in 2037 library sequences Scomplib [34.26] start: Thu Dec 18 15:11:23 2008 done: Thu Dec 18 15:11:24 2008 Total Scan time: 0.580 Total Display time: 0.030 Function used was FASTA [version 34.26.5 April 26, 2007]