hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-09400004/chunk_1/iprscan-20080502-09400004.nocrc
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Query sequence: KIAA0668
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF07738.3.ls Sad1 / UNC-like C-terminal                     256.9    3.9e-74   1
PF07738.3.fs Sad1 / UNC-like C-terminal                     254.9    1.5e-73   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF07738.3.fs   1/1     606   740 ..     1   147 []   254.9  1.5e-73
PF07738.3.ls   1/1     606   740 ..     1   147 []   256.9  3.9e-74

Alignments of top-scoring domains:
PF07738.3.fs: domain 1 of 1, from 606 to 740: score 254.9, E = 1.5e-73
                   *->lnyeaksprvilqedkDkympgpCwsfkgsrGfvvieLsepIiveav
                      l+y+++sprvilq+d   ++pg+Cw+f+g++Gf v++Ls  I ++av
    KIAA0668   606    LWYHSQSPRVILQPD---VHPGNCWAFQGPQGFAVVRLSARIRPTAV 649  

                   tLeHveksvspdGnfsSAPKdFeVsgserypdeesTeewvlLGeFtYdld
                   tLeHv+k++sp++++sSAPKdF+++g +++ ++e     +lLG+FtYd+d
    KIAA0668   650 TLEHVPKALSPNSTISSAPKDFAIFGFDEDLQQE----GTLLGKFTYDQD 695  

                   gknlQtFqlqnpCpyiekqswvkyVklrilSNyGnehYTClYrfRVhGts
                   g+++QtF++q p  ++    +++ V+lril+N+G+++YTC+YrfRVhG++
    KIAA0668   696 GEPIQTFHFQAP-TMA----TYQVVELRILTNWGHPEYTCIYRFRVHGEP 740  

                   <-*
                      
    KIAA0668     -     -    

PF07738.3.ls: domain 1 of 1, from 606 to 740: score 256.9, E = 3.9e-74
                   *->lnyeaksprvilqedkDkympgpCwsfkgsrGfvvieLsepIiveav
                      l+y+++sprvilq+d   ++pg+Cw+f+g++Gf v++Ls  I ++av
    KIAA0668   606    LWYHSQSPRVILQPD---VHPGNCWAFQGPQGFAVVRLSARIRPTAV 649  

                   tLeHveksvspdGnfsSAPKdFeVsgserypdeesTeewvlLGeFtYdld
                   tLeHv+k++sp++++sSAPKdF+++g +++ ++e     +lLG+FtYd+d
    KIAA0668   650 TLEHVPKALSPNSTISSAPKDFAIFGFDEDLQQE----GTLLGKFTYDQD 695  

                   gknlQtFqlqnpCpyiekqswvkyVklrilSNyGnehYTClYrfRVhGts
                   g+++QtF++q p  ++    +++ V+lril+N+G+++YTC+YrfRVhG++
    KIAA0668   696 GEPIQTFHFQAP-TMA----TYQVVELRILTNWGHPEYTCIYRFRVHGEP 740  

                   <-*
                      
    KIAA0668     -     -    

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