HUGE

Gene/Protein Characteristic Table for KIAA0675

Link to : Rouge \| GTOP \| SWISS-PROT/TrEMBL \| GeneCards\| RefDIC
Features : DNA sequence \| Protein sequence \| Expression \| Mapping

Product ID :	ORK01989
Accession No. :	AB014575
Description :	E3 ubiquitin-protein ligase DZIP3.
HUGO Gene Name :
Clone Name :	hk02566 [Vector Info]
Flexi ORF Clone :	pF1KA0675
Source :	Human adult brain

Features of the cloned DNA sequence	Description

Length: 4246 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis) for :
cloned DNA seq.
Warning for N-terminal truncation:
NO

Warning for coding interruption:
NO

Integrity of 3' end

Length of 3'UTR 490 bp

Genome contig ID gi89161205f_109704388
PolyA signal sequence
(None)
+----*----+----*----+----*----+----
CACATGTACCCTAAAACTTAAAGTATAATAATAAT
Flanking genome sequence
(188538 - 188587)
----+----*----+----*----+----*----+----*----+----*
AAAAGAAAAAAAAAAGAAAGTAAAAAAAAAAAAAGAAGTGGATATTCACG

Ensembl ContigView (Add our DAS server as a DAS source)

Chr f/r start end exon identity class

ContigView(URL based/DAS) 3 f 109804388 109892924 32 100.0 Perfect prediction

Features of the protein sequence	Description

Length: 1217 aa

Result of homology search against nr database (FASTA output, Multiple alignment)

Entry	ID%	Protein	Source
Q86Y13	100.0	E3 ubiquitin-pr...	Homo sapiens
XP_001151742	98.9	zinc finger DAZ...	Pan troglodytes
XP_001503296	92.4	similar to E3 u...	Equus caballus
XP_535732	91.0	similar to Ubiq...	Canis lupus fam...
NP_001103487	83.2	DAZ interacting...	Mus musculus

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of homology search against other HUGE database (FASTA output)
No significant homologues
Result of motif / domain search (InterProScan and SOSUI)

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Result of InterProScan

Search method interpro_ID From To Entry Definition

HMMPfam IPR001841 1157 1196 PF00097 Zinc finger

HMMSmart IPR001841 1157 1196 SM00184 Zinc finger

ProfileScan IPR001841 1157 1197 PS50089 Zinc finger

Search method	interpro_ID	From	To	Entry	Definition
HMMPfam	IPR001841	1157	1196	PF00097	Zinc finger
HMMSmart	IPR001841	1157	1196	SM00184	Zinc finger
ProfileScan	IPR001841	1157	1197	PS50089	Zinc finger

Prediction of transmembrane (TM) segments

Method No. N terminal transmembrane region C terminal type length

SOSUI2 1 136 HQINIGYYLTLLFLYGVALTE 156 PRIMARY 21

Method	No.	N terminal	transmembrane region	C terminal	type	length
SOSUI2	1	136	HQINIGYYLTLLFLYGVALTE	156	PRIMARY	21

Expression profile	Description

: RT-PCR Description
: RT-PCR-ELISA Description
: Experimental conditions

Primer_f
: CAGACTCCACGTTTTGCTACC

Primer_r
: TACACCACTCAAACAAGCAGC

PCR conditions
: 95 °C30 sec55 °C30 sec72 °C60 sec30 cycles

RT-PCR	Description

RT-PCR-ELISA	Description

RH mapping information	Description

Chromosome No.

: 3

Experimental conditions

Panel name	: GeneBridge 4
Primer_f	: CAGACTCCACGTTTTGCTACC
Primer_r	: TACACCACTCAAACAAGCAGC
PCR product length	: 139 bp
PCR conditions	: 95 °C15 sec64 °C60 sec30 cycles

How to obtain KIAA clone(s) Back to the HUGE Protein Database homepage

	cloned DNA seq.
Warning for N-terminal truncation:	NO
Warning for coding interruption:	NO

Length of 3'UTR	490 bp
Genome contig ID	gi89161205f_109704388
PolyA signal sequence (None)	+--------+--------+----*----+---- CACATGTACCCTAAAACTTAAAGTATAATAATAAT
Flanking genome sequence (188538 - 188587)	----+--------+--------+--------+--------+----* AAAAGAAAAAAAAAAGAAAGTAAAAAAAAAAAAAGAAGTGGATATTCACG

	Chr	f/r	start	end	exon	identity	class
ContigView(URL based/DAS)	3	f	109804388	109892924	32	100.0	Perfect prediction

Gene/Protein Characteristic Table for KIAA0675

Features of the cloned DNA sequence

Features of the protein sequence

Expression profile

RH mapping information