# /usr/local/bin/fasta34 -b50 -d10 -E0.01 -H -O./tmp/hk02746.fasta.huge -Q ../query/KIAA0680.ptfa ./tmplib.23663 2
FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 KIAA0680, 635 aa
 vs ./tmplib.23663 library

1986870 residues in  2037 sequences
  Expectation_n fit: rho(ln(x))= 13.6996+/-0.0123; mu= -24.9254+/- 0.835
 mean_var=592.9694+/-140.152, 0's: 0 Z-trim: 4  B-trim: 0 in 0/40
 Lambda= 0.052669

FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 38, opt: 26, open/ext: -10/-2, width:  16
The best scores are:                                      opt bits E(2037)
KIAA1733  ( 509 res)   ph00321                     ( 509)  406 45.4 1.4e-05


>>KIAA1733  ( 509 res)   ph00321                          (509 aa)
 initn: 620 init1: 371 opt: 406  Z-score: 191.9  bits: 45.4 E(): 1.4e-05
Smith-Waterman score: 601;  31.099% identity (53.818% similar) in 537 aa overlap (5-540:108-509)

                                         10        20        30    
KIAA06                           DMDNAVDGLDKASIANSDGPTAGSQTPPFKRKGK
                                     :.. ... .   ::. . :..:::..:..:
KIAA17 DDIDRRPIRRVRSKSDTPYLAEARISFNLGAAEEVERLAAMRSDSLVPGTHTPPIRRRSK
        80        90       100       110       120       130       

           40        50        60        70        80        90    
KIAA06 LSTIGKIFKPWKWRKKKTSDKFRETSAVLERKISTRQSREELIRRGVLKELPDQDGDVTV
       ....:.::::::::::: :.::..:::.:::::: ::::::::.::::::. :.::....
KIAA17 FANLGRIFKPWKWRKKK-SEKFKHTSAALERKISMRQSREELIKRGVLKEIYDKDGELSI
       140       150        160       170       180       190      

          100       110       120       130       140       150    
KIAA06 NFENSNGHMIPIGEESTREENVVKSEEGNGSVSEKTPPLEEQAEDKKENTENHSETPAAP
       . :          :.: .. . ..: . .  .  .  :.    .  . .. . :.   .:
KIAA17 SNE----------EDSLENGQSLSSSQLSLPALSEMEPVPMPRDPCSYEVLQPSDIMDGP
                  200       210       220       230       240      

          160       170       180       190       200       210    
KIAA06 ALPPSAPPKPRSKPKPKKSPVPPKGATAGASHKGDEVPPIKKNTKAPGKQAPVPPPKPAS
          :.:: :    :   . :.::: .       : ..  .. ...  :.:.       :.
KIAA17 --DPGAPVKLPCLPVKLSPPLPPKKVMICMPVGGPDLSLVSYTAQKSGQQGV------AQ
          250       260       270       280       290              

          220       230       240       250       260       270    
KIAA06 RNTTREAAGSSHSKKTTGSKASASPSTSSTSSRPKASKETVSSKAGTVGTTKGKRKTDKQ
       .. :   .  .:. .  ::...  :::  :.: :   .              : :  :. 
KIAA17 HHHTVLPSQIQHQLQY-GSHGQHLPST--TGSLPMHPS--------------GCRMIDEL
      300       310        320         330                     340 

          280       290       300       310       320       330    
KIAA06 PITSHLSSDTTTSGTSDLKGEPAETRVESFKLEQTVPGAEEQNTGKFKSMVPPPPVAPAP
         :  .. .                :.::   :: :: .   ... ..:      :. : 
KIAA17 NKTLAMTMQ----------------RLES--SEQRVPCSTSYHSSGLHS---GDGVTKA-
             350                         360       370             

          340       350       360       370       380       390    
KIAA06 SPLAPPLPLEDQCITASDTPVVLVSVGADLPVSALDPSQLLWAEEPTNRTTLYSGTGLSV
       .:.. :           ..:.:..                   :   :. ..   .    
KIAA17 GPMGLP--------EIRQVPTVVI-------------------ECDDNKENVPHES----
     380               390                          400            

          400       410       420       430       440       450    
KIAA06 NRENAKCFTTKEELGKTVPQLLTPGLMGESSESFSASEDEGHREYQANDSDSDGPILYTD
       . :...:. :.::                                              .
KIAA17 DYEDSSCLYTREE----------------------------------------------E
      410       420                                                

          460        470       480       490       500       510   
KIAA06 DEDEDEDEDGS-GESALASKIRRRDTLAIKLGNRPSKKELEDKNILQRTSEEERQEIRQQ
       .:.::::.:.:   :.:: :. :.:.:::::.:::::.:::.:::: : ..::: :.:::
KIAA17 EEEEDEDDDSSLYTSSLAMKVCRKDSLAIKLSNRPSKRELEEKNILPRQTDEERLELRQQ
            430       440       450       460       470       480  

           520       530       540       550       560       570   
KIAA06 IGTKLVRRLSQRPTTEELEQRNILKQKNEEEEQEAKMELKRRLSRKLSLRPTVAELQARR
       :::::.::::::::.::::::::::.:                                 
KIAA17 IGTKLTRRLSQRPTAEELEQRNILKRK                                 
            490       500                                          




635 residues in 1 query   sequences
1986870 residues in 2037 library sequences
 Scomplib [34.26]
 start: Thu Dec 18 15:11:50 2008 done: Thu Dec 18 15:11:51 2008
 Total Scan time:  0.530 Total Display time:  0.010

Function used was FASTA [version 34.26.5 April 26, 2007]