# /usr/local/bin/fasta34 -b50 -d10 -E0.01 -H -O./tmp/hk02879.fasta.huge -Q ../query/KIAA0682.ptfa ./tmplib.23663 2
FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 KIAA0682, 973 aa
 vs ./tmplib.23663 library

1986532 residues in  2037 sequences
  Expectation_n fit: rho(ln(x))= 7.5049+/-0.00764; mu= 5.3756+/- 0.521
 mean_var=237.7536+/-55.499, 0's: 0 Z-trim: 3  B-trim: 0 in 0/40
 Lambda= 0.083178

FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 39, opt: 27, open/ext: -10/-2, width:  16
The best scores are:                                      opt bits E(2037)
KIAA0765  ( 952 res)   hk04803s1                   ( 952)  223 40.6  0.0011


>>KIAA0765  ( 952 res)   hk04803s1                        (952 aa)
 initn: 185 init1: 102 opt: 223  Z-score: 157.8  bits: 40.6 E(): 0.0011
Smith-Waterman score: 229;  25.869% identity (57.915% similar) in 259 aa overlap (276-510:413-660)

         250       260       270       280        290       300    
KIAA06 AVHCDEGSEAEEEDSSATPVLQERDSRGAGQEQGMPAGKKRPP-EARAETEKPANQK---
                                     :..: :.:. .:: ..  ....:..::   
KIAA07 NRMLMIQRYVEVSPATERQWVAAGGHITFKQNMG-PSGQTHPPPQTLPRSKSPSGQKRSR
            390       400       410        420       430       440 

                  310       320       330         340       350    
KIAA06 -----EPTTCHTVKLRGAPFNVTEKNVMEFLAPLKPV--AIRIVRNAHGNKTGYIFVDFS
            :   :  : :.: ::.. .:.:..:.  :  :  .: :. . .:. ::  ::.: 
KIAA07 SRSPHEAGFC--VYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFR
             450         460       470       480       490         

          360       370       380       390       400       410    
KIAA06 NEEEVKQALKCNREYMGGRYIEVFREKNVPTTKGAPKNTTKSWQGRILGENEEEEDL---
       :: . : ::  ...:::.:.:.:      : :: .  .     . :. . . .....   
KIAA07 NEADYKAALCRHKQYMGNRFIQVH-----PITKKGMLEKIDMIRKRLQNFSYDQREMILN
     500       510       520            530       540       550    

                   420       430       440         450       460   
KIAA06 ----AESGRL--FVRNLPYTSTEEDLEKLFSKYGPLSE--LHYPIDSLTKKPKGFAFITF
           ..:...   . :.:.. :. :. . : .  :..:  .:  .:. . .  : :.. :
KIAA07 PEGDVNSAKVCAHITNIPFSITKMDVLQ-FLEGIPVDENAVHVLVDN-NGQGLGQALVQF
          560       570       580        590       600        610  

           470       480         490       500       510       520 
KIAA06 MFPEHAVKAYSEVDGQVFQGR--MLHVLPSTIKKEASEDASALGSSSYKKKKEAQDKANS
          . : :.  ..  . ..::  ..::.     .:  ..  : :... :           
KIAA07 KNEDDARKS-ERLHRKKLNGREAFVHVVTLEDMREIEKNPPAQGKKGLKMPVPGNPAVPG
            620        630       640       650       660       670 

             530       540       550       560       570       580 
KIAA06 ASSHNWNTLFMGPNAVADAIAQKYNATKSQVFDHETKGSVAVRVALGETQLVQEVRRFLI
                                                                   
KIAA07 MPNAGLPGVGLPSAGLPGAGLPSTGLPGSAITSAGLPGAGMPSAGIPSAGGEEHAFLTVG
             680       690       700       710       720       730 




973 residues in 1 query   sequences
1986532 residues in 2037 library sequences
 Scomplib [34.26]
 start: Thu Dec 18 15:11:55 2008 done: Thu Dec 18 15:11:55 2008
 Total Scan time:  0.670 Total Display time:  0.020

Function used was FASTA [version 34.26.5 April 26, 2007]