hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-10035558/chunk_1/iprscan-20080502-10035558.nocrc
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Query sequence: KIAA0682
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00076.12.ls RNA recognition motif. (a.k.a. RRM, RBD, or    354.8   1.3e-103   6
PF00076.12.fs RNA recognition motif. (a.k.a. RRM, RBD, or    343.1   4.2e-100   6

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00076.12.fs   1/6      17    87 ..     1    74 []    62.5  9.1e-17
PF00076.12.ls   1/6      17    87 ..     1    74 []    64.4  3.3e-16
PF00076.12.ls   2/6     309   377 ..     1    74 []    39.9  8.1e-09
PF00076.12.fs   2/6     309   377 ..     1    74 []    38.0  6.8e-10
PF00076.12.ls   3/6     417   488 ..     1    74 []    80.3  5.7e-21
PF00076.12.fs   3/6     417   488 ..     1    74 []    78.3  3.3e-21
PF00076.12.fs   5/6     745   819 ..     1    74 []    90.1  1.7e-24
PF00076.12.ls   5/6     745   819 ..     1    74 []    92.1  1.6e-24
PF00076.12.fs   6/6     847   920 ..     1    74 []    58.7    1e-15
PF00076.12.ls   6/6     847   920 ..     1    74 []    60.7  4.5e-15

Alignments of top-scoring domains:
PF00076.12.fs: domain 1 of 6, from 17 to 87: score 62.5, E = 9.1e-17
                   *->lfVgNLppdtteedLkdlFskfGpiesikivrDttretgrskGfaFV
                      l V+NLp+++ ee  ++lF+ fG  +++ ++       g+ + f+F+
    KIAA0682    17    LIVKNLPNGMKEERFRQLFAAFGTLTDCSLKF---TKDGKFRKFGFI 60   

                   eFedeedAekAldalnGkelggrelrv<-*
                    F++ee+A+kA +  n+  ++  +++v   
    KIAA0682    61 GFKSEEEAQKAQKHFNKSFIDTSRITV    87   

PF00076.12.ls: domain 1 of 6, from 17 to 87: score 64.4, E = 3.3e-16
                   *->lfVgNLppdtteedLkdlFskfGpiesikivrDttretgrskGfaFV
                      l V+NLp+++ ee  ++lF+ fG  +++ ++       g+ + f+F+
    KIAA0682    17    LIVKNLPNGMKEERFRQLFAAFGTLTDCSLKF---TKDGKFRKFGFI 60   

                   eFedeedAekAldalnGkelggrelrv<-*
                    F++ee+A+kA +  n+  ++  +++v   
    KIAA0682    61 GFKSEEEAQKAQKHFNKSFIDTSRITV    87   

PF00076.12.ls: domain 2 of 6, from 309 to 377: score 39.9, E = 8.1e-09
                   *->lfVgNLppdtteedLkdlFskfGpiesikivrDttretgrskGfaFV
                      +  ++ p+++te+ + ++ ++  p+  i+ivr+   ++g+  G+ FV
    KIAA0682   309    VKLRGAPFNVTEKNVMEFLAPLKPV-AIRIVRN---AHGNKTGYIFV 351  

                   eFedeedAekAldalnGkelggrelrv<-*
                    F +ee+++ Al+ +n  + ggr ++v   
    KIAA0682   352 DFSNEEEVKQALK-CNREYMGGRYIEV    377  

PF00076.12.fs: domain 2 of 6, from 309 to 377: score 38.0, E = 6.8e-10
                   *->lfVgNLppdtteedLkdlFskfGpiesikivrDttretgrskGfaFV
                      +  ++ p+++te+ + ++ ++  p+  i+ivr+   ++g+  G+ FV
    KIAA0682   309    VKLRGAPFNVTEKNVMEFLAPLKPV-AIRIVRN---AHGNKTGYIFV 351  

                   eFedeedAekAldalnGkelggrelrv<-*
                    F +ee+++ Al+ +n  + ggr ++v   
    KIAA0682   352 DFSNEEEVKQALK-CNREYMGGRYIEV    377  

PF00076.12.ls: domain 3 of 6, from 417 to 488: score 80.3, E = 5.7e-21
                   *->lfVgNLppdtteedLkdlFskfGpiesikivrDttretgrskGfaFV
                      lfV+NLp+  teedL++lFsk+Gp  +   ++D  + t+++kGfaF+
    KIAA0682   417    LFVRNLPYTSTEEDLEKLFSKYGPLSELHYPID--SLTKKPKGFAFI 461  

                   eFedeedAekAldalnGkelggrelrv<-*
                   +F  +e A kA ++ +G+ + gr l+v   
    KIAA0682   462 TFMFPEHAVKAYSEVDGQVFQGRMLHV    488  

PF00076.12.fs: domain 3 of 6, from 417 to 488: score 78.3, E = 3.3e-21
                   *->lfVgNLppdtteedLkdlFskfGpiesikivrDttretgrskGfaFV
                      lfV+NLp+  teedL++lFsk+Gp  +   ++D  + t+++kGfaF+
    KIAA0682   417    LFVRNLPYTSTEEDLEKLFSKYGPLSELHYPID--SLTKKPKGFAFI 461  

                   eFedeedAekAldalnGkelggrelrv<-*
                   +F  +e A kA ++ +G+ + gr l+v   
    KIAA0682   462 TFMFPEHAVKAYSEVDGQVFQGRMLHV    488  

PF00076.12.fs: domain 5 of 6, from 745 to 819: score 90.1, E = 1.7e-24
                   *->lfVgNLppdtteedLkdlFskfGpiesikivrD.ttretgrskGfaF
                      lf++NL++dttee+Lk+ Fsk+G ++s+ i++++       s+Gf+F
    KIAA0682   745    LFIKNLNFDTTEEKLKEVFSKVGTVKSCSISKKkNKAGVLLSMGFGF 791  

                   VeFedeedAekAldalnGkelggrelrv<-*
                   Ve+ ++e+A+kAl++l+G+ ++g++l+v   
    KIAA0682   792 VEYRKPEQAQKALKQLQGHVVDGHKLEV    819  

PF00076.12.ls: domain 5 of 6, from 745 to 819: score 92.1, E = 1.6e-24
                   *->lfVgNLppdtteedLkdlFskfGpiesikivrD.ttretgrskGfaF
                      lf++NL++dttee+Lk+ Fsk+G ++s+ i++++       s+Gf+F
    KIAA0682   745    LFIKNLNFDTTEEKLKEVFSKVGTVKSCSISKKkNKAGVLLSMGFGF 791  

                   VeFedeedAekAldalnGkelggrelrv<-*
                   Ve+ ++e+A+kAl++l+G+ ++g++l+v   
    KIAA0682   792 VEYRKPEQAQKALKQLQGHVVDGHKLEV    819  

PF00076.12.fs: domain 6 of 6, from 847 to 920: score 58.7, E = 1e-15
                   *->lfVgNLppdtteedLkdlFskfGpiesikivrDttretgrskGfaFV
                      + V+N+p+ +  +++++lFs fG+ + ++++++    tg ++Gf+FV
    KIAA0682   847    ILVRNIPFQAHSREIRELFSTFGELKTVRLPKK-MTGTGTHRGFGFV 892  

                   eFedeedAekAldalnG.kelggrelrv<-*
                    F ++ dA++A  al +++ l gr+l     
    KIAA0682   893 DFLTKQDAKRAFNALCHsTHLYGRRLVL    920  

PF00076.12.ls: domain 6 of 6, from 847 to 920: score 60.7, E = 4.5e-15
                   *->lfVgNLppdtteedLkdlFskfGpiesikivrDttretgrskGfaFV
                      + V+N+p+ +  +++++lFs fG+ + ++++++    tg ++Gf+FV
    KIAA0682   847    ILVRNIPFQAHSREIRELFSTFGELKTVRLPKK-MTGTGTHRGFGFV 892  

                   eFedeedAekAldalnG.kelggrelrv<-*
                    F ++ dA++A  al +++ l gr+l     
    KIAA0682   893 DFLTKQDAKRAFNALCHsTHLYGRRLVL    920  

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