hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/smart.HMMs.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-10035558/chunk_1/iprscan-20080502-10035558.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA0682 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- SM00360 443.3 1.2e-128 6 SM00361 32.4 6.1e-05 2 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- SM00360 1/6 16 88 .. 1 121 [] 84.5 1.3e-20 SM00360 2/6 308 378 .. 1 121 [] 51.4 1.2e-10 SM00361 1/2 416 489 .. 1 91 [] 16.9 0.54 SM00360 3/6 416 489 .. 1 121 [] 93.2 3.1e-23 SM00360 4/6 601 668 .. 1 121 [] 37.7 1.6e-06 SM00361 2/2 744 820 .. 1 91 [] 15.5 0.74 SM00360 5/6 744 820 .. 1 121 [] 97.5 1.6e-24 SM00360 6/6 846 921 .. 1 121 [] 79.1 5.3e-19 Alignments of top-scoring domains: SM00360: domain 1 of 6, from 16 to 88: score 84.5, E = 1.3e-20 *->tlfVgNLndppdvteedLrelFkevksvevfraeteskfGkvvsvri +l+V+NL p ++ee r+lF + fG+++++ + KIAA0682 16 RLIVKNL--PNGMKEERFRQLF--------------AAFGTLTDCSL 46 vrdkdnilirressleqkvqlgkdsgTGkskGfaFVeFedeedAekAlli kd Gk + f+F+ F++ee+A+kA + KIAA0682 47 KFTKD----------------------GKFRKFGFIGFKSEEEAQKA--Q 72 ealnaskGkeledgGrptlglrVe<-* +++n ++ + + + ++Ve KIAA0682 73 KHFN---KSFI--DTSR---ITVE 88 SM00360: domain 2 of 6, from 308 to 378: score 51.4, E = 1.2e-10 *->tlfVgNLndppdvteedLrelFkevksvevfraeteskfGkvvsvri t+ ++ p++vte+ + e+ ++ +v +ri KIAA0682 308 TVKLRGA--PFNVTEKNVMEFL--------------APLKPV-AIRI 337 vrdkdnilirressleqkvqlgkdsgTGkskGfaFVeFedeedAekAlli vr+ G G+ FV+F++ee++++A + KIAA0682 338 VRNAH----------------------GNKTGYIFVDFSNEEEVKQA--L 363 ealnaskGkeledgGrptlglrVe<-* +++ ++ gGr ++V KIAA0682 364 KCNR----EYM--GGRY---IEVF 378 SM00361: domain 1 of 2, from 416 to 489: score 16.9, E = 0.54 *->lvlvnglvspeeakdEdferelseeeeyfgevgkinKivinkvtkrl +++v++l + +Ed+e ++s ++g + + i+ tk KIAA0682 416 RLFVRNL-PYTST-EEDLEKLFS----KYGPLSELH-YPIDSLTK-- 453 NayenhkrgsggvYitFFersEDAarAivdlnGryfdGRtlkae<-* +g ++itF +E A +A ++++G +f GR l+ KIAA0682 454 -----KPKGF--AFITF-MFPEHAVKAYSEVDGQVFQGRMLHVL 489 SM00360: domain 3 of 6, from 416 to 489: score 93.2, E = 3.1e-23 *->tlfVgNLndppdvteedLrelFkevksvevfraeteskfGkvvsvri +lfV+NL p++ teedL++lF sk+G++ + + KIAA0682 416 RLFVRNL--PYTSTEEDLEKLF--------------SKYGPLSELHY 446 vrdkdnilirressleqkvqlgkdsgTGkskGfaFVeFedeedAekAlli + d T+k+kGfaF++F +e A kA KIAA0682 447 PIDSL---------------------TKKPKGFAFITFMFPEHAVKA--Y 473 ealnaskGkeledgGrptlglrVe<-* ++ + G+++ +Gr+ l+V KIAA0682 474 SEVD---GQVF--QGRM---LHVL 489 SM00360: domain 4 of 6, from 601 to 668: score 37.7, E = 1.6e-06 *->tlfVgNLndppdvteedLrelFkevksvevfraeteskfGkvvsvri ++ V+NL p + +L+e F ++fG + +v + KIAA0682 601 VILVKNL--PAGTLAAELQETF--------------GRFGSLGRVLL 631 vrdkdnilirressleqkvqlgkdsgTGkskGfaFVeFedeedAekAlli + + a VeF ++ +A+kA KIAA0682 632 PEGGT---------------------------TAIVEFLEPLEARKA--F 652 ealnaskGkeledgGrptlglrVe<-* ++l +++ + p l++e KIAA0682 653 RHLA---YSKF--HHVP---LYLE 668 SM00361: domain 2 of 2, from 744 to 820: score 15.5, E = 0.74 *->lvlvnglvspeeakdEdferelseeeeyfgevgkinKivinkvtkrl +++ +l + +E +++++s + g+v+++ + k++k KIAA0682 744 TLFIKNL-NFDTT-EEKLKEVFS----KVGTVKSCS--ISKKKNK-- 780 NayenhkrgsggvYitFFersEDAarAivdlnGryfdGRtlkae<-* + + +++ ++++ + +E A++A+ +l G ++dG l + KIAA0682 781 --AGVLLSMGF-GFVEY-RKPEQAQKALKQLQGHVVDGHKLEVR 820 SM00360: domain 5 of 6, from 744 to 820: score 97.5, E = 1.6e-24 *->tlfVgNLndppdvteedLrelFkevksvevfraeteskfGkvvsvri tlf++NL ++d+tee L+e+F sk G+v+s+ i KIAA0682 744 TLFIKNL--NFDTTEEKLKEVF--------------SKVGTVKSCSI 774 vrdkdnilirressleqkvqlgkdsgTGkskGfaFVeFedeedAekAlli ++k+ + g s Gf+FVe++ +e+A+kA + KIAA0682 775 SKKKN------------------KAGVLLSMGFGFVEYRKPEQAQKA--L 804 ealnaskGkeledgGrptlglrVe<-* ++l+ G+++ +G++ l+V+ KIAA0682 805 KQLQ---GHVV--DGHK---LEVR 820 SM00360: domain 6 of 6, from 846 to 921: score 79.1, E = 5.3e-19 *->tlfVgNLndppdvteedLrelFkevksvevfraeteskfGkvvsvri ++ V+N+ p+++ ++relF s fG+++ vr+ KIAA0682 846 KILVRNI--PFQAHSREIRELF--------------STFGELKTVRL 876 vrdkdnilirressleqkvqlgkdsgTGkskGfaFVeFedeedAekAlli +++ + gTG ++Gf+FV+F +++dA++A+ KIAA0682 877 PKKMT--------------------GTGTHRGFGFVDFLTKQDAKRAF-N 905 ealnaskGkeledgGrptlglrVe<-* ++ + + l +Gr+ l +e KIAA0682 906 ALCH---STHL--YGRR---LVLE 921 //