hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-10090201/chunk_1/iprscan-20080502-10090201.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA0685 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF04499.6.ls SIT4 phosphatase-associated protein 677.7 7.9e-201 1 PF04499.6.fs SIT4 phosphatase-associated protein 676.2 2.3e-200 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF04499.6.fs 1/1 140 544 .. 1 599 [] 676.2 2.3e-200 PF04499.6.ls 1/1 140 544 .. 1 599 [] 677.7 7.9e-201 Alignments of top-scoring domains: PF04499.6.fs: domain 1 of 1, from 140 to 544: score 676.2, E = 2.3e-200 *->necLLdrktdqiltFlkkkdnfVdklLkHIgisaiECLMDfLLrlis +++L++rkt+q++tFlkkkd+f++++LkHIg+sa+ MD+LLrl+s KIAA0685 140 IGNLIARKTEQVITFLKKKDKFISLVLKHIGTSAL---MDLLLRLVS 183 TdDkpesrytgViqWLndqnLiekLvdlLhpSeYdpEYmldvQsnaadfL +++++ +r ++V++WLn++++i++Lv+l+hpS+ d+ d+Qsna+++L KIAA0685 184 CVEPAGLR-QDVLHWLNEEKVIQRLVELIHPSQ-DE----DRQSNASQTL 227 CaiiriSrDKLYIMNskldiqssIGPneLtrqLvSpetieqLldimlVEE C+i+r++r ++++++q++++P++L+++L+S++++eqLl++m+ KIAA0685 228 CDIVRLGR------DQGSQLQEALEPDPLLTALESQDCVEQLLKNMF--- 268 GCPAEdsrsekggsaLvngvsiiIELlrKnNSdvsYDfvnslstqLEEie +++r+ +s+Lv+g++++++Ll++++++++ ++v+s+s+ L KIAA0685 269 ----DGDRT---ESCLVSGTQVLLTLLETRRVGTE-GLVDSFSQGL---- 306 shLIEERHYSYGLMRPCMDNPPteRdPqiylgellegfLaerLpdFlqTL eR++ ++++++l+g+ ++rL+dF+q L KIAA0685 307 -----------------------ERSY-AVSSSVLHGI-EPRLKDFHQ-L 330 LlkpekesvklPLLeTtyGklePPLGfeRlKIvELIAeLLhcsnmallnE Ll+p+k+++ ++Tt+G+le+PLG++Rl+ +L+A+LLh++++++++E KIAA0685 331 LLNPPKKKA----ILTTIGVLEEPLGNARLHGARLMAALLHTNTPSINQE 376 prGEdIvreRDklRdklfehdtikesnarelvmkdeddnddtvednneed KIAA0685 - -------------------------------------------------- - lknleDaNdsideeeqadtikskvkdtnksltnvdseeseaepvdenngk KIAA0685 - -------------------------------------------------- - vkaddnddDDeedyfEipydsesieeklRslPvVGDlLKIkLiKdlgvip L+ +l++++ KIAA0685 377 -----------------------------------------LC-RLNTMD 384 riLDLFFeYPWNNFLHnvVediiqqiLnspmdegyN.............. +LDLFF+Y+WNNFLH++Ve +i++iL++ ++e++++ ++++++ +++++ KIAA0685 385 LLLDLFFKYTWNNFLHFQVELCIAAILSHAAREERTeasgsesrvepphe 434 .................sfLvkhLLqecdSyrFLiekIleadedpnldgd +++++ +++++ + +++++v+hL+q+c+ L+++Ilea+e++ KIAA0685 435 ngnrsletpqpaaslpdNTMVTHLFQKCC----LVQRILEAWEAN----- 475 iqsdFilpgskdsveasgkgglRlGYMGHLTlIAeeivkfselypssniq ++++++gg+R+G+MGHLT+IA+++v++ e++p+++++ KIAA0685 476 -------------DHTQAAGGMRRGNMGHLTRIANAVVQNLERGPVQTHI 512 iqllkelpilledekWeeyvedvLedtrekyNv<-* ++++++lp++++ ++We++ve++L++t+++++v KIAA0685 513 SEVIRGLPADCR-GRWESFVEETLTETNRRNTV 544 PF04499.6.ls: domain 1 of 1, from 140 to 544: score 677.7, E = 7.9e-201 *->necLLdrktdqiltFlkkkdnfVdklLkHIgisaiECLMDfLLrlis +++L++rkt+q++tFlkkkd+f++++LkHIg+sa+ MD+LLrl+s KIAA0685 140 IGNLIARKTEQVITFLKKKDKFISLVLKHIGTSAL---MDLLLRLVS 183 TdDkpesrytgViqWLndqnLiekLvdlLhpSeYdpEYmldvQsnaadfL +++++ +r ++V++WLn++++i++Lv+l+hpS+ d+ d+Qsna+++L KIAA0685 184 CVEPAGLR-QDVLHWLNEEKVIQRLVELIHPSQ-DE----DRQSNASQTL 227 CaiiriSrDKLYIMNskldiqssIGPneLtrqLvSpetieqLldimlVEE C+i+r++r ++++++q++++P++L+++L+S++++eqLl++m+ KIAA0685 228 CDIVRLGR------DQGSQLQEALEPDPLLTALESQDCVEQLLKNMF--- 268 GCPAEdsrsekggsaLvngvsiiIELlrKnNSdvsYDfvnslstqLEEie +++r+ +s+Lv+g++++++Ll++++++++ ++v+s+s+ L KIAA0685 269 ----DGDRT---ESCLVSGTQVLLTLLETRRVGTE-GLVDSFSQGL---- 306 shLIEERHYSYGLMRPCMDNPPteRdPqiylgellegfLaerLpdFlqTL eR++ ++++++l+g+ ++rL+dF+q L KIAA0685 307 -----------------------ERSY-AVSSSVLHGI-EPRLKDFHQ-L 330 LlkpekesvklPLLeTtyGklePPLGfeRlKIvELIAeLLhcsnmallnE Ll+p+k+++ ++Tt+G+le+PLG++Rl+ +L+A+LLh++++++++E KIAA0685 331 LLNPPKKKA----ILTTIGVLEEPLGNARLHGARLMAALLHTNTPSINQE 376 prGEdIvreRDklRdklfehdtikesnarelvmkdeddnddtvednneed KIAA0685 - -------------------------------------------------- - lknleDaNdsideeeqadtikskvkdtnksltnvdseeseaepvdenngk KIAA0685 - -------------------------------------------------- - vkaddnddDDeedyfEipydsesieeklRslPvVGDlLKIkLiKdlgvip L+ +l++++ KIAA0685 377 -----------------------------------------LC-RLNTMD 384 riLDLFFeYPWNNFLHnvVediiqqiLnspmdegyN.............. +LDLFF+Y+WNNFLH++Ve +i++iL++ ++e++++ ++++++ +++++ KIAA0685 385 LLLDLFFKYTWNNFLHFQVELCIAAILSHAAREERTeasgsesrvepphe 434 .................sfLvkhLLqecdSyrFLiekIleadedpnldgd +++++ +++++ + +++++v+hL+q+c+ L+++Ilea+e++ KIAA0685 435 ngnrsletpqpaaslpdNTMVTHLFQKCC----LVQRILEAWEAN----- 475 iqsdFilpgskdsveasgkgglRlGYMGHLTlIAeeivkfselypssniq ++++++gg+R+G+MGHLT+IA+++v++ e++p+++++ KIAA0685 476 -------------DHTQAAGGMRRGNMGHLTRIANAVVQNLERGPVQTHI 512 iqllkelpilledekWeeyvedvLedtrekyNv<-* ++++++lp++++ ++We++ve++L++t+++++v KIAA0685 513 SEVIRGLPADCR-GRWESFVEETLTETNRRNTV 544 //