hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-10172893/chunk_1/iprscan-20080502-10172893.nocrc
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Query sequence: KIAA0690
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF08161.2.ls NUC173 domain                                  410.5   2.2e-120   1
PF08161.2.fs NUC173 domain                                  408.5   8.7e-120   1
PF02985.12.ls HEAT repeat                                     25.6    0.00016   4

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF02985.12.ls   1/4     327   363 ..     1    36 []    14.1     0.46
PF08161.2.fs   1/1     388   586 ..     1   204 []   408.5 8.7e-120
PF08161.2.ls   1/1     388   586 ..     1   204 []   410.5 2.2e-120

Alignments of top-scoring domains:
PF02985.12.ls: domain 1 of 4, from 327 to 363: score 14.1, E = 0.46
                   *->e.ildellplllkllnDpdpeVReaAaeaLgalaevl<-*
                       ++l++++ + +++l +p++ V  aA ++L ++++ +   
    KIAA0690   327    LgHLPRFFGTAVTCLLSPHSQVLTAATQSLKEILKEC    363  

PF08161.2.fs: domain 1 of 1, from 388 to 586: score 408.5, E = 8.7e-120
                   *->lcafiveelLsikfhaawkevLnvlsalFdklGkrsnPfLlkaLqil
                      +++  vee+L++kfhaaw+ vL++l ++F+++G++++P ++k+Lq+l
    KIAA0690   388    MFR-AVEEGLTYKFHAAWSSVLQLLCVFFEACGRQAHPVMRKCLQSL 433  

                   gdlRtneeeffpgrkeldeaiGsAirAMGPeaVLkvlPLnlenpsdisld
                   +dlR ++  +fp++++ld+a+G+A+ +MGPe+VL+++PL +++ ++ +ld
    KIAA0690   434 CDLRLSP--HFPHTAALDQAVGAAVTSMGPEVVLQAVPLEIDGSEE-TLD 480  

                   pgRaWLLPlLRDnirnasLsfFkseflPLaekfeskikkLaqakesiqsK
                   ++R+WLLP++RD+++ ++L+fF+++flPLa++++sk+++Laqa+  ++sK
    KIAA0690   481 FPRSWLLPVIRDHVQETRLGFFTTYFLPLANTLKSKAMDLAQAGSTVESK 530  

                   iyqTlvdQlWsLLPgFCelPtDlvesFtdefArtLgnlLyervdLRttIC
                   iy+Tl++Q W+LLPgFC++PtD+  sF+ ++ArtLg++++er+dLR t+C
    KIAA0690   531 IYDTLQWQMWTLLPGFCTRPTDVAISFK-GLARTLGMAISERPDLRVTVC 579  

                   qALrvLv<-*
                   qALr+L+   
    KIAA0690   580 QALRTLI    586  

PF08161.2.ls: domain 1 of 1, from 388 to 586: score 410.5, E = 2.2e-120
                   *->lcafiveelLsikfhaawkevLnvlsalFdklGkrsnPfLlkaLqil
                      +++  vee+L++kfhaaw+ vL++l ++F+++G++++P ++k+Lq+l
    KIAA0690   388    MFR-AVEEGLTYKFHAAWSSVLQLLCVFFEACGRQAHPVMRKCLQSL 433  

                   gdlRtneeeffpgrkeldeaiGsAirAMGPeaVLkvlPLnlenpsdisld
                   +dlR ++  +fp++++ld+a+G+A+ +MGPe+VL+++PL +++ ++ +ld
    KIAA0690   434 CDLRLSP--HFPHTAALDQAVGAAVTSMGPEVVLQAVPLEIDGSEE-TLD 480  

                   pgRaWLLPlLRDnirnasLsfFkseflPLaekfeskikkLaqakesiqsK
                   ++R+WLLP++RD+++ ++L+fF+++flPLa++++sk+++Laqa+  ++sK
    KIAA0690   481 FPRSWLLPVIRDHVQETRLGFFTTYFLPLANTLKSKAMDLAQAGSTVESK 530  

                   iyqTlvdQlWsLLPgFCelPtDlvesFtdefArtLgnlLyervdLRttIC
                   iy+Tl++Q W+LLPgFC++PtD+  sF+ ++ArtLg++++er+dLR t+C
    KIAA0690   531 IYDTLQWQMWTLLPGFCTRPTDVAISFK-GLARTLGMAISERPDLRVTVC 579  

                   qALrvLv<-*
                   qALr+L+   
    KIAA0690   580 QALRTLI    586  

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