# /usr/local/bin/fasta34 -b50 -d10 -E0.01 -H -O./tmp/hk03927.fasta.huge -Q ../query/KIAA0693.ptfa ./tmplib.23663 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 KIAA0693, 404 aa vs ./tmplib.23663 library 1987101 residues in 2037 sequences Expectation_n fit: rho(ln(x))= 9.3577+/-0.00879; mu= -8.4381+/- 0.593 mean_var=304.8736+/-74.148, 0's: 0 Z-trim: 5 B-trim: 0 in 0/40 Lambda= 0.073454 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 37, opt: 25, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2037) KIAA1819 ( 1173 res) hh00456 (1173) 233 38.3 0.0029 KIAA0192 ( 2124 res) ha02370 (2124) 224 37.6 0.0085 >>KIAA1819 ( 1173 res) hh00456 (1173 aa) initn: 702 init1: 146 opt: 233 Z-score: 150.4 bits: 38.3 E(): 0.0029 Smith-Waterman score: 246; 28.235% identity (48.235% similar) in 340 aa overlap (74-387:363-686) 50 60 70 80 90 100 KIAA06 LEYQSKGKTAECTQYQQILHRNLVYLATIADSNQNMQSLLPAPPTQNMNLGPGALTQSGS : .:. : : : .. . .: KIAA18 LTNISVPPMSDLELENMINATIKQDDPFNIDLGQQSQRSTPRPSLPMEKI----VIKSEY 340 350 360 370 380 110 120 130 140 150 160 KIAA06 SQGLHSQGSLSDAISTGLPPSSLLQGQIGNGPSHVSMQQTAPNTLPTTSMSISGPGYSHA : :: . : : . :::. ...: : .: .. :.. . .. .: : :.: KIAA18 SPGLTQGPSGSPQLR---PPSAGPAFSMAN--SALSTSSPIPSVPQSQAQPQTGSGASRA 390 400 410 420 430 440 170 180 190 200 210 KIAA06 GPASQGVPMQGQGTIGNYVSRTNINMQSNP-VSMMQQQAATSHYS---SAQGGSQHYQGQ :. : : : ... : :.. ... ::: ...: :. : : :: KIAA18 LPSWQEVSHAQQ------LKQIAANRQQHARMQQHQQQHQPTNWSALPSSAGPSPGPFGQ 450 460 470 480 490 220 230 240 250 260 KIAA06 SSIAM--MGQGS---QGSSMMG-------QRPMAPYR----PSQQGSSQQYLGQEEYYGE .: .:: . :.: : : .. :: : :: ::. . : :.. KIAA18 EKIPSPSFGQQTFSPQSSPMPGVAGGSGQSKVMANYMYKAGPSAQGGHLDVLMQQKPQDL 500 510 520 530 540 550 270 280 290 300 310 KIAA06 QYS---HSQGAAEPMGQQYYPDGH--GDYAYQQSSYTEQSYDR-SFEESTQHYYEGGNSQ . : . . : :: . : : .: : :: . : .. :. . ::. . ..: KIAA18 SRSFINNPHPAMEPRQGNTKPLFHFNSDQANQQMPSVLPSQNKPSLLHYTQQQQQQQQQQ 560 570 580 590 600 610 320 330 340 350 360 370 KIAA06 YSQQQAGYQQGAAQQQTYSQQQYPSQQSYPGQQQGYGSAQGAPSQYPGYQQGQGQQYGSY .::: :: ::: .::. : :. :::. ::: .: :: : :: . KIAA18 QQQQQQQQQQQQQQQQQQQQQSSISAQQQQ-QQQSSISAQQQQQQQQQQQQQQQQQQQQQ 620 630 640 650 660 670 380 390 400 KIAA06 RAPQTAPSAQQQRPYGYEQGQYGNYQQ . : ::.: KIAA18 QQQQQQPSSQPAQSLPSQPLLRSPLPLQQKLLLQQMQNQPIAGMGYQVSQQQRQDQHSVV 680 690 700 710 720 730 >>KIAA0192 ( 2124 res) ha02370 (2124 aa) initn: 607 init1: 150 opt: 224 Z-score: 142.1 bits: 37.6 E(): 0.0085 Smith-Waterman score: 248; 25.872% identity (48.837% similar) in 344 aa overlap (86-398:1764-2093) 60 70 80 90 100 110 KIAA06 TQYQQILHRNLVYLATIADSNQNMQSLLPAPPTQNMNLGPGALTQSGSSQG---LHSQGS :: . .::..:. . :: :..:.. KIAA01 TKGKKRSQPATKTEDYGMGPGRSGPYGVTVPPDLLHHPNPGSITHLNYRQGSIGLYTQNQ 1740 1750 1760 1770 1780 1790 120 130 140 150 160 KIAA06 LSDAISTGLPPSSLLQGQIGNGPSHVSMQQTAPNTLPTTSMSISG--PG------YSHAG : . . : .. . . :. . : :..:::: .. : :. : . KIAA01 PLPAGGPRVDPYRPVRLPMQKLPT----RPTYPGVLPTTMTGVMGLEPSSYKTSVYRQQQ 1800 1810 1820 1830 1840 170 180 190 200 210 KIAA06 PA-SQGVPM-----QGQGTIGNYVSRTNINMQSNPVSM--MQQQAATSHYSSAQGGSQHY :: :: . :.:: .: ..... : .: : .: . . . : : : .:: KIAA01 PAVPQGQRLRQQLQQSQGMLG----QSSVH-QMTPSSSYGLQTSQGYTPYVSHVGLQQHT 1850 1860 1870 1880 1890 1900 220 230 240 250 260 KIAA06 QGQSSIAMMGQGSQG--SSMMGQRP--MAPYRPSQQGSSQQYLGQEEYYG------EQYS .... . .:: :. . : . : : :: : : :: ...: KIAA01 GPAGTMVPPSYSSQPYQSTHPSTNPTLVDPTRHLQQRPSGYVHQQAPTYGHGLTSTQRFS 1910 1920 1930 1940 1950 1960 270 280 290 300 310 320 KIAA06 HSQGAAEPMGQQYYP-DGHGDYAYQQSSYTEQSYDRSFEESTQHYYEGGNSQYSQQQAGY :. :: . . : ...: : .:. ... ... :. . ..: .::: : KIAA01 HQTLQQTPMISTMTPMSAQGVQAGVRSTAILPEQQQQQQQQQQQQQQQQQQQQQQQQQQY 1970 1980 1990 2000 2010 2020 330 340 350 360 370 380 KIAA06 QQGAAQQQTYSQQQYPSQQSYPGQQQGYGSAQGAPSQYPGYQQGQGQQYGSYRAPQTAPS . ::: .:: .::. ::: : .: :: : :: . :: :. KIAA01 HIRQQQQQQILRQQQQQQQQQQQQQQ-----QQQQQQQQQQQQHQQQQQQQAAPPQPQPQ 2030 2040 2050 2060 2070 390 400 KIAA06 AQQQ-RPYGYEQGQYGNYQQ .: : . : .: : KIAA01 SQPQFQRQGLQQTQQQQQTAALVRQLQQQLSNTQPQPSTNIFGRY 2080 2090 2100 2110 2120 404 residues in 1 query sequences 1987101 residues in 2037 library sequences Scomplib [34.26] start: Thu Dec 18 15:12:20 2008 done: Thu Dec 18 15:12:20 2008 Total Scan time: 0.390 Total Display time: 0.030 Function used was FASTA [version 34.26.5 April 26, 2007]