# /hgtech/tools/fasta-34.26.5_v890/fasta34_t -T 8 -b50 -d10 -E0.01 -H -O./tmp/hk03927.fasta.nr -Q ../query/KIAA0693.ptfa /cdna2/lib/nr/nr 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 KIAA0693, 404 aa vs /cdna2/lib/nr/nr library 2693465022 residues in 7827732 sequences statistics sampled from 60000 to 7809886 sequences Expectation_n fit: rho(ln(x))= 6.6127+/-0.000201; mu= 3.6844+/- 0.011 mean_var=121.4289+/-22.963, 0's: 37 Z-trim: 98 B-trim: 0 in 0/66 Lambda= 0.116389 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 37, opt: 25, open/ext: -10/-2, width: 16 The best scores are: opt bits E(7827732) gi|20139981|sp|O75177.2|S18L1_HUMAN RecName: Full= ( 396) 2700 464.2 2.2e-128 gi|158256402|dbj|BAF84174.1| unnamed protein produ ( 396) 2697 463.7 3.2e-128 gi|123980010|gb|ABM81834.1| synovial sarcoma trans ( 396) 2695 463.4 4e-128 gi|194389536|dbj|BAG61729.1| unnamed protein produ ( 416) 2644 454.8 1.6e-125 gi|119595797|gb|EAW75391.1| synovial sarcoma trans ( 374) 2556 440.0 4.1e-121 gi|34365130|emb|CAE45918.1| hypothetical protein [ ( 374) 2551 439.2 7.3e-121 gi|109091391|ref|XP_001089944.1| PREDICTED: simila ( 373) 2542 437.7 2.1e-120 gi|26344347|dbj|BAC35824.1| unnamed protein produc ( 402) 2484 428.0 1.9e-117 gi|149034049|gb|EDL88832.1| synovial sarcoma trans ( 402) 2484 428.0 1.9e-117 gi|26332743|dbj|BAC30089.1| unnamed protein produc ( 402) 2480 427.3 3e-117 gi|32451797|gb|AAH54730.1| Synovial sarcoma transl ( 402) 2476 426.6 4.8e-117 gi|126302735|ref|XP_001368343.1| PREDICTED: hypoth ( 402) 2427 418.4 1.4e-114 gi|148675360|gb|EDL07307.1| synovial sarcoma trans ( 395) 2424 417.9 2e-114 gi|118100623|ref|XP_417402.2| PREDICTED: hypotheti ( 402) 2391 412.3 9.4e-113 gi|119595799|gb|EAW75393.1| synovial sarcoma trans ( 399) 2378 410.2 4.3e-112 gi|115304721|gb|AAI23449.1| Synovial sarcoma trans ( 402) 2375 409.7 6.1e-112 gi|194224612|ref|XP_001491106.2| PREDICTED: simila ( 435) 2341 404.0 3.4e-110 gi|119595802|gb|EAW75396.1| synovial sarcoma trans ( 394) 2323 400.9 2.5e-109 gi|14516833|gb|AAK53461.1| calcium-responsive tran ( 401) 2302 397.4 3e-108 gi|119595795|gb|EAW75389.1| synovial sarcoma trans ( 514) 2292 395.8 1.2e-107 gi|149636026|ref|XP_001505924.1| PREDICTED: hypoth ( 399) 2289 395.2 1.3e-107 gi|73992677|ref|XP_543083.2| PREDICTED: similar to ( 678) 2259 390.4 6.6e-106 gi|50415475|gb|AAH77557.1| Ss18l1-prov protein [Xe ( 403) 2217 383.1 5.9e-104 gi|114682908|ref|XP_514762.2| PREDICTED: SS18-like ( 407) 2216 383.0 6.7e-104 gi|37782416|gb|AAP34454.1| LP2261 [Homo sapiens] ( 314) 2160 373.5 3.7e-101 gi|119595800|gb|EAW75394.1| synovial sarcoma trans ( 525) 2043 354.0 4.5e-95 gi|119595796|gb|EAW75390.1| synovial sarcoma trans ( 265) 1839 319.5 5.5e-85 gi|149034050|gb|EDL88833.1| synovial sarcoma trans ( 371) 1839 319.6 7.1e-85 gi|193785077|dbj|BAG54230.1| unnamed protein produ ( 265) 1834 318.7 9.8e-85 gi|148675359|gb|EDL07306.1| synovial sarcoma trans ( 364) 1819 316.3 7.2e-84 gi|90083827|dbj|BAE90864.1| unnamed protein produc ( 381) 1543 269.9 6.6e-70 gi|47229331|emb|CAG04083.1| unnamed protein produc ( 452) 1453 254.9 2.7e-65 gi|194386672|dbj|BAG61146.1| unnamed protein produ ( 336) 1162 205.9 1.1e-50 gi|8809766|gb|AAF79937.1| unknown [Homo sapiens] ( 492) 882 159.0 2.1e-36 gi|119621617|gb|EAX01212.1| synovial sarcoma trans ( 412) 880 158.6 2.3e-36 gi|19879848|gb|AAM00188.1| SYT protein [Homo sapie ( 414) 880 158.6 2.3e-36 gi|158260043|dbj|BAF82199.1| unnamed protein produ ( 418) 880 158.6 2.3e-36 gi|20141795|sp|Q15532.3|SSXT_HUMAN RecName: Full=P ( 418) 880 158.6 2.3e-36 gi|13384208|gb|AAK21314.1| SYT variant 1 [Homo sap ( 422) 880 158.6 2.3e-36 gi|144226022|dbj|BAF56181.1| fusion protein SYT-SS ( 488) 880 158.7 2.6e-36 gi|144226026|dbj|BAF56183.1| fusion protein SYT-SS ( 488) 880 158.7 2.6e-36 gi|109121837|ref|XP_001098462.1| PREDICTED: simila ( 464) 877 158.2 3.6e-36 gi|215274958|sp|Q5RFQ1.2|SSXT_PONAB RecName: Full= ( 418) 876 158.0 3.7e-36 gi|199561150|ref|NP_001094370.1| synovial sarcoma ( 418) 876 158.0 3.7e-36 gi|114672770|ref|XP_512069.2| PREDICTED: similar t ( 479) 876 158.0 4.1e-36 gi|55725077|emb|CAH89406.1| hypothetical protein [ ( 418) 875 157.8 4.1e-36 gi|64654776|gb|AAH96222.1| Synovial sarcoma transl ( 418) 874 157.6 4.7e-36 gi|126321743|ref|XP_001362192.1| PREDICTED: simila ( 418) 873 157.5 5.2e-36 gi|74141543|dbj|BAE38546.1| unnamed protein produc ( 418) 868 156.6 9.4e-36 gi|3915034|sp|Q62280.1|SSXT_MOUSE RecName: Full=Pr ( 418) 864 156.0 1.5e-35 >>gi|20139981|sp|O75177.2|S18L1_HUMAN RecName: Full=SS18 (396 aa) initn: 2700 init1: 2700 opt: 2700 Z-score: 2461.0 bits: 464.2 E(): 2.2e-128 Smith-Waterman score: 2700; 100.000% identity (100.000% similar) in 396 aa overlap (9-404:1-396) 10 20 30 40 50 60 KIAA06 RAEPRAATMSVAFASARPRGKGEVTQQTIQKMLDENHHLIQCILEYQSKGKTAECTQYQQ :::::::::::::::::::::::::::::::::::::::::::::::::::: gi|201 MSVAFASARPRGKGEVTQQTIQKMLDENHHLIQCILEYQSKGKTAECTQYQQ 10 20 30 40 50 70 80 90 100 110 120 KIAA06 ILHRNLVYLATIADSNQNMQSLLPAPPTQNMNLGPGALTQSGSSQGLHSQGSLSDAISTG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|201 ILHRNLVYLATIADSNQNMQSLLPAPPTQNMNLGPGALTQSGSSQGLHSQGSLSDAISTG 60 70 80 90 100 110 130 140 150 160 170 180 KIAA06 LPPSSLLQGQIGNGPSHVSMQQTAPNTLPTTSMSISGPGYSHAGPASQGVPMQGQGTIGN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|201 LPPSSLLQGQIGNGPSHVSMQQTAPNTLPTTSMSISGPGYSHAGPASQGVPMQGQGTIGN 120 130 140 150 160 170 190 200 210 220 230 240 KIAA06 YVSRTNINMQSNPVSMMQQQAATSHYSSAQGGSQHYQGQSSIAMMGQGSQGSSMMGQRPM :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|201 YVSRTNINMQSNPVSMMQQQAATSHYSSAQGGSQHYQGQSSIAMMGQGSQGSSMMGQRPM 180 190 200 210 220 230 250 260 270 280 290 300 KIAA06 APYRPSQQGSSQQYLGQEEYYGEQYSHSQGAAEPMGQQYYPDGHGDYAYQQSSYTEQSYD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|201 APYRPSQQGSSQQYLGQEEYYGEQYSHSQGAAEPMGQQYYPDGHGDYAYQQSSYTEQSYD 240 250 260 270 280 290 310 320 330 340 350 360 KIAA06 RSFEESTQHYYEGGNSQYSQQQAGYQQGAAQQQTYSQQQYPSQQSYPGQQQGYGSAQGAP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|201 RSFEESTQHYYEGGNSQYSQQQAGYQQGAAQQQTYSQQQYPSQQSYPGQQQGYGSAQGAP 300 310 320 330 340 350 370 380 390 400 KIAA06 SQYPGYQQGQGQQYGSYRAPQTAPSAQQQRPYGYEQGQYGNYQQ :::::::::::::::::::::::::::::::::::::::::::: gi|201 SQYPGYQQGQGQQYGSYRAPQTAPSAQQQRPYGYEQGQYGNYQQ 360 370 380 390 >>gi|158256402|dbj|BAF84174.1| unnamed protein product [ (396 aa) initn: 2697 init1: 2697 opt: 2697 Z-score: 2458.2 bits: 463.7 E(): 3.2e-128 Smith-Waterman score: 2697; 99.747% identity (100.000% similar) in 396 aa overlap (9-404:1-396) 10 20 30 40 50 60 KIAA06 RAEPRAATMSVAFASARPRGKGEVTQQTIQKMLDENHHLIQCILEYQSKGKTAECTQYQQ :::::::::::::::::::::::::::::::::::::::::::::::::::: gi|158 MSVAFASARPRGKGEVTQQTIQKMLDENHHLIQCILEYQSKGKTAECTQYQQ 10 20 30 40 50 70 80 90 100 110 120 KIAA06 ILHRNLVYLATIADSNQNMQSLLPAPPTQNMNLGPGALTQSGSSQGLHSQGSLSDAISTG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|158 ILHRNLVYLATIADSNQNMQSLLPAPPTQNMNLGPGALTQSGSSQGLHSQGSLSDAISTG 60 70 80 90 100 110 130 140 150 160 170 180 KIAA06 LPPSSLLQGQIGNGPSHVSMQQTAPNTLPTTSMSISGPGYSHAGPASQGVPMQGQGTIGN ::::::::::::::::::::::::::.::::::::::::::::::::::::::::::::: gi|158 LPPSSLLQGQIGNGPSHVSMQQTAPNSLPTTSMSISGPGYSHAGPASQGVPMQGQGTIGN 120 130 140 150 160 170 190 200 210 220 230 240 KIAA06 YVSRTNINMQSNPVSMMQQQAATSHYSSAQGGSQHYQGQSSIAMMGQGSQGSSMMGQRPM :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|158 YVSRTNINMQSNPVSMMQQQAATSHYSSAQGGSQHYQGQSSIAMMGQGSQGSSMMGQRPM 180 190 200 210 220 230 250 260 270 280 290 300 KIAA06 APYRPSQQGSSQQYLGQEEYYGEQYSHSQGAAEPMGQQYYPDGHGDYAYQQSSYTEQSYD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|158 APYRPSQQGSSQQYLGQEEYYGEQYSHSQGAAEPMGQQYYPDGHGDYAYQQSSYTEQSYD 240 250 260 270 280 290 310 320 330 340 350 360 KIAA06 RSFEESTQHYYEGGNSQYSQQQAGYQQGAAQQQTYSQQQYPSQQSYPGQQQGYGSAQGAP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|158 RSFEESTQHYYEGGNSQYSQQQAGYQQGAAQQQTYSQQQYPSQQSYPGQQQGYGSAQGAP 300 310 320 330 340 350 370 380 390 400 KIAA06 SQYPGYQQGQGQQYGSYRAPQTAPSAQQQRPYGYEQGQYGNYQQ :::::::::::::::::::::::::::::::::::::::::::: gi|158 SQYPGYQQGQGQQYGSYRAPQTAPSAQQQRPYGYEQGQYGNYQQ 360 370 380 390 >>gi|123980010|gb|ABM81834.1| synovial sarcoma transloca (396 aa) initn: 2695 init1: 2695 opt: 2695 Z-score: 2456.4 bits: 463.4 E(): 4e-128 Smith-Waterman score: 2695; 99.747% identity (100.000% similar) in 396 aa overlap (9-404:1-396) 10 20 30 40 50 60 KIAA06 RAEPRAATMSVAFASARPRGKGEVTQQTIQKMLDENHHLIQCILEYQSKGKTAECTQYQQ :::::::::::::::::::::::::::::::::::::::::::::::::::: gi|123 MSVAFASARPRGKGEVTQQTIQKMLDENHHLIQCILEYQSKGKTAECTQYQQ 10 20 30 40 50 70 80 90 100 110 120 KIAA06 ILHRNLVYLATIADSNQNMQSLLPAPPTQNMNLGPGALTQSGSSQGLHSQGSLSDAISTG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|123 ILHRNLVYLATIADSNQNMQSLLPAPPTQNMNLGPGALTQSGSSQGLHSQGSLSDAISTG 60 70 80 90 100 110 130 140 150 160 170 180 KIAA06 LPPSSLLQGQIGNGPSHVSMQQTAPNTLPTTSMSISGPGYSHAGPASQGVPMQGQGTIGN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|123 LPPSSLLQGQIGNGPSHVSMQQTAPNTLPTTSMSISGPGYSHAGPASQGVPMQGQGTIGN 120 130 140 150 160 170 190 200 210 220 230 240 KIAA06 YVSRTNINMQSNPVSMMQQQAATSHYSSAQGGSQHYQGQSSIAMMGQGSQGSSMMGQRPM ::::::::::::::::.::::::::::::::::::::::::::::::::::::::::::: gi|123 YVSRTNINMQSNPVSMIQQQAATSHYSSAQGGSQHYQGQSSIAMMGQGSQGSSMMGQRPM 180 190 200 210 220 230 250 260 270 280 290 300 KIAA06 APYRPSQQGSSQQYLGQEEYYGEQYSHSQGAAEPMGQQYYPDGHGDYAYQQSSYTEQSYD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|123 APYRPSQQGSSQQYLGQEEYYGEQYSHSQGAAEPMGQQYYPDGHGDYAYQQSSYTEQSYD 240 250 260 270 280 290 310 320 330 340 350 360 KIAA06 RSFEESTQHYYEGGNSQYSQQQAGYQQGAAQQQTYSQQQYPSQQSYPGQQQGYGSAQGAP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|123 RSFEESTQHYYEGGNSQYSQQQAGYQQGAAQQQTYSQQQYPSQQSYPGQQQGYGSAQGAP 300 310 320 330 340 350 370 380 390 400 KIAA06 SQYPGYQQGQGQQYGSYRAPQTAPSAQQQRPYGYEQGQYGNYQQ :::::::::::::::::::::::::::::::::::::::::::: gi|123 SQYPGYQQGQGQQYGSYRAPQTAPSAQQQRPYGYEQGQYGNYQQ 360 370 380 390 >>gi|194389536|dbj|BAG61729.1| unnamed protein product [ (416 aa) initn: 2907 init1: 2644 opt: 2644 Z-score: 2409.9 bits: 454.8 E(): 1.6e-125 Smith-Waterman score: 2644; 99.233% identity (100.000% similar) in 391 aa overlap (9-399:1-391) 10 20 30 40 50 60 KIAA06 RAEPRAATMSVAFASARPRGKGEVTQQTIQKMLDENHHLIQCILEYQSKGKTAECTQYQQ :::::::::::::::::::::::::::::::::::::::::::::::::::: gi|194 MSVAFASARPRGKGEVTQQTIQKMLDENHHLIQCILEYQSKGKTAECTQYQQ 10 20 30 40 50 70 80 90 100 110 120 KIAA06 ILHRNLVYLATIADSNQNMQSLLPAPPTQNMNLGPGALTQSGSSQGLHSQGSLSDAISTG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|194 ILHRNLVYLATIADSNQNMQSLLPAPPTQNMNLGPGALTQSGSSQGLHSQGSLSDAISTG 60 70 80 90 100 110 130 140 150 160 170 180 KIAA06 LPPSSLLQGQIGNGPSHVSMQQTAPNTLPTTSMSISGPGYSHAGPASQGVPMQGQGTIGN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|194 LPPSSLLQGQIGNGPSHVSMQQTAPNTLPTTSMSISGPGYSHAGPASQGVPMQGQGTIGN 120 130 140 150 160 170 190 200 210 220 230 240 KIAA06 YVSRTNINMQSNPVSMMQQQAATSHYSSAQGGSQHYQGQSSIAMMGQGSQGSSMMGQRPM :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|194 YVSRTNINMQSNPVSMMQQQAATSHYSSAQGGSQHYQGQSSIAMMGQGSQGSSMMGQRPM 180 190 200 210 220 230 250 260 270 280 290 300 KIAA06 APYRPSQQGSSQQYLGQEEYYGEQYSHSQGAAEPMGQQYYPDGHGDYAYQQSSYTEQSYD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|194 APYRPSQQGSSQQYLGQEEYYGEQYSHSQGAAEPMGQQYYPDGHGDYAYQQSSYTEQSYD 240 250 260 270 280 290 310 320 330 340 350 360 KIAA06 RSFEESTQHYYEGGNSQYSQQQAGYQQGAAQQQTYSQQQYPSQQSYPGQQQGYGSAQGAP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|194 RSFEESTQHYYEGGNSQYSQQQAGYQQGAAQQQTYSQQQYPSQQSYPGQQQGYGSAQGAP 300 310 320 330 340 350 370 380 390 400 KIAA06 SQYPGYQQGQGQQYGSYRAPQTAPSAQQQRPYGYEQGQYGNYQQ ::::::::::::::::::::::::::::::::::::... gi|194 SQYPGYQQGQGQQYGSYRAPQTAPSAQQQRPYGYEQASFLDVSRCAHPPRLSRHNEDFSY 360 370 380 390 400 410 gi|194 GHEE >>gi|119595797|gb|EAW75391.1| synovial sarcoma transloca (374 aa) initn: 2556 init1: 2556 opt: 2556 Z-score: 2330.6 bits: 440.0 E(): 4.1e-121 Smith-Waterman score: 2556; 100.000% identity (100.000% similar) in 373 aa overlap (32-404:2-374) 10 20 30 40 50 60 KIAA06 AEPRAATMSVAFASARPRGKGEVTQQTIQKMLDENHHLIQCILEYQSKGKTAECTQYQQI :::::::::::::::::::::::::::::: gi|119 MMLDENHHLIQCILEYQSKGKTAECTQYQQI 10 20 30 70 80 90 100 110 120 KIAA06 LHRNLVYLATIADSNQNMQSLLPAPPTQNMNLGPGALTQSGSSQGLHSQGSLSDAISTGL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 LHRNLVYLATIADSNQNMQSLLPAPPTQNMNLGPGALTQSGSSQGLHSQGSLSDAISTGL 40 50 60 70 80 90 130 140 150 160 170 180 KIAA06 PPSSLLQGQIGNGPSHVSMQQTAPNTLPTTSMSISGPGYSHAGPASQGVPMQGQGTIGNY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 PPSSLLQGQIGNGPSHVSMQQTAPNTLPTTSMSISGPGYSHAGPASQGVPMQGQGTIGNY 100 110 120 130 140 150 190 200 210 220 230 240 KIAA06 VSRTNINMQSNPVSMMQQQAATSHYSSAQGGSQHYQGQSSIAMMGQGSQGSSMMGQRPMA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 VSRTNINMQSNPVSMMQQQAATSHYSSAQGGSQHYQGQSSIAMMGQGSQGSSMMGQRPMA 160 170 180 190 200 210 250 260 270 280 290 300 KIAA06 PYRPSQQGSSQQYLGQEEYYGEQYSHSQGAAEPMGQQYYPDGHGDYAYQQSSYTEQSYDR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 PYRPSQQGSSQQYLGQEEYYGEQYSHSQGAAEPMGQQYYPDGHGDYAYQQSSYTEQSYDR 220 230 240 250 260 270 310 320 330 340 350 360 KIAA06 SFEESTQHYYEGGNSQYSQQQAGYQQGAAQQQTYSQQQYPSQQSYPGQQQGYGSAQGAPS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 SFEESTQHYYEGGNSQYSQQQAGYQQGAAQQQTYSQQQYPSQQSYPGQQQGYGSAQGAPS 280 290 300 310 320 330 370 380 390 400 KIAA06 QYPGYQQGQGQQYGSYRAPQTAPSAQQQRPYGYEQGQYGNYQQ ::::::::::::::::::::::::::::::::::::::::::: gi|119 QYPGYQQGQGQQYGSYRAPQTAPSAQQQRPYGYEQGQYGNYQQ 340 350 360 370 >>gi|34365130|emb|CAE45918.1| hypothetical protein [Homo (374 aa) initn: 2551 init1: 2551 opt: 2551 Z-score: 2326.1 bits: 439.2 E(): 7.3e-121 Smith-Waterman score: 2551; 99.732% identity (100.000% similar) in 373 aa overlap (32-404:2-374) 10 20 30 40 50 60 KIAA06 AEPRAATMSVAFASARPRGKGEVTQQTIQKMLDENHHLIQCILEYQSKGKTAECTQYQQI :::::::::::::::::::::::::::::: gi|343 MMLDENHHLIQCILEYQSKGKTAECTQYQQI 10 20 30 70 80 90 100 110 120 KIAA06 LHRNLVYLATIADSNQNMQSLLPAPPTQNMNLGPGALTQSGSSQGLHSQGSLSDAISTGL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|343 LHRNLVYLATIADSNQNMQSLLPAPPTQNMNLGPGALTQSGSSQGLHSQGSLSDAISTGL 40 50 60 70 80 90 130 140 150 160 170 180 KIAA06 PPSSLLQGQIGNGPSHVSMQQTAPNTLPTTSMSISGPGYSHAGPASQGVPMQGQGTIGNY ::::::::::::::.::::::::::::::::::::::::::::::::::::::::::::: gi|343 PPSSLLQGQIGNGPGHVSMQQTAPNTLPTTSMSISGPGYSHAGPASQGVPMQGQGTIGNY 100 110 120 130 140 150 190 200 210 220 230 240 KIAA06 VSRTNINMQSNPVSMMQQQAATSHYSSAQGGSQHYQGQSSIAMMGQGSQGSSMMGQRPMA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|343 VSRTNINMQSNPVSMMQQQAATSHYSSAQGGSQHYQGQSSIAMMGQGSQGSSMMGQRPMA 160 170 180 190 200 210 250 260 270 280 290 300 KIAA06 PYRPSQQGSSQQYLGQEEYYGEQYSHSQGAAEPMGQQYYPDGHGDYAYQQSSYTEQSYDR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|343 PYRPSQQGSSQQYLGQEEYYGEQYSHSQGAAEPMGQQYYPDGHGDYAYQQSSYTEQSYDR 220 230 240 250 260 270 310 320 330 340 350 360 KIAA06 SFEESTQHYYEGGNSQYSQQQAGYQQGAAQQQTYSQQQYPSQQSYPGQQQGYGSAQGAPS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|343 SFEESTQHYYEGGNSQYSQQQAGYQQGAAQQQTYSQQQYPSQQSYPGQQQGYGSAQGAPS 280 290 300 310 320 330 370 380 390 400 KIAA06 QYPGYQQGQGQQYGSYRAPQTAPSAQQQRPYGYEQGQYGNYQQ ::::::::::::::::::::::::::::::::::::::::::: gi|343 QYPGYQQGQGQQYGSYRAPQTAPSAQQQRPYGYEQGQYGNYQQ 340 350 360 370 >>gi|109091391|ref|XP_001089944.1| PREDICTED: similar to (373 aa) initn: 2542 init1: 2542 opt: 2542 Z-score: 2317.9 bits: 437.7 E(): 2.1e-120 Smith-Waterman score: 2542; 99.464% identity (99.732% similar) in 373 aa overlap (32-404:1-373) 10 20 30 40 50 60 KIAA06 AEPRAATMSVAFASARPRGKGEVTQQTIQKMLDENHHLIQCILEYQSKGKTAECTQYQQI :::::::::::::::::::::::::::::: gi|109 MLDENHHLIQCILEYQSKGKTAECTQYQQI 10 20 30 70 80 90 100 110 120 KIAA06 LHRNLVYLATIADSNQNMQSLLPAPPTQNMNLGPGALTQSGSSQGLHSQGSLSDAISTGL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 LHRNLVYLATIADSNQNMQSLLPAPPTQNMNLGPGALTQSGSSQGLHSQGSLSDAISTGL 40 50 60 70 80 90 130 140 150 160 170 180 KIAA06 PPSSLLQGQIGNGPSHVSMQQTAPNTLPTTSMSISGPGYSHAGPASQGVPMQGQGTIGNY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 PPSSLLQGQIGNGPSHVSMQQTAPNTLPTTSMSISGPGYSHAGPASQGVPMQGQGTIGNY 100 110 120 130 140 150 190 200 210 220 230 240 KIAA06 VSRTNINMQSNPVSMMQQQAATSHYSSAQGGSQHYQGQSSIAMMGQGSQGSSMMGQRPMA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 VSRTNINMQSNPVSMMQQQAATSHYSSAQGGSQHYQGQSSIAMMGQGSQGSSMMGQRPMA 160 170 180 190 200 210 250 260 270 280 290 300 KIAA06 PYRPSQQGSSQQYLGQEEYYGEQYSHSQGAAEPMGQQYYPDGHGDYAYQQSSYTEQSYDR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 PYRPSQQGSSQQYLGQEEYYGEQYSHSQGAAEPMGQQYYPDGHGDYAYQQSSYTEQSYDR 220 230 240 250 260 270 310 320 330 340 350 360 KIAA06 SFEESTQHYYEGGNSQYSQQQAGYQQGAAQQQTYSQQQYPSQQSYPGQQQGYGSAQGAPS ::::::::::::::::::::::::::::::::::::::::::::::::::::: :::::: gi|109 SFEESTQHYYEGGNSQYSQQQAGYQQGAAQQQTYSQQQYPSQQSYPGQQQGYGPAQGAPS 280 290 300 310 320 330 370 380 390 400 KIAA06 QYPGYQQGQGQQYGSYRAPQTAPSAQQQRPYGYEQGQYGNYQQ :::.::::::::::::::::::::::::::::::::::::::: gi|109 QYPSYQQGQGQQYGSYRAPQTAPSAQQQRPYGYEQGQYGNYQQ 340 350 360 370 >>gi|26344347|dbj|BAC35824.1| unnamed protein product [M (402 aa) initn: 1591 init1: 1591 opt: 2484 Z-score: 2264.9 bits: 428.0 E(): 1.9e-117 Smith-Waterman score: 2484; 89.801% identity (96.766% similar) in 402 aa overlap (9-404:1-402) 10 20 30 40 50 60 KIAA06 RAEPRAATMSVAFASARPRGKGEVTQQTIQKMLDENHHLIQCILEYQSKGKTAECTQYQQ ::::::::::::::::::::::::::::::::::::.::::::::::::::: gi|263 MSVAFASARPRGKGEVTQQTIQKMLDENHHLIQCILDYQSKGKTAECTQYQQ 10 20 30 40 50 70 80 90 100 110 120 KIAA06 ILHRNLVYLATIADSNQNMQSLLPAPPTQNMNLGPGALTQSGSSQGLHSQGSLSDAISTG ::::::::::::::::::::::::::::::::::::::.::::::::: ::::::..::: gi|263 ILHRNLVYLATIADSNQNMQSLLPAPPTQNMNLGPGALSQSGSSQGLHPQGSLSDTVSTG 60 70 80 90 100 110 130 140 150 160 170 KIAA06 LPPSSLLQGQIGNGPSHVSMQQTAPNTLPTTSMSISG------PGYSHAGPASQGVPMQG :::.::.::::::::.:::::::: .::::::::.:: :::::.::.::.::::: gi|263 LPPASLMQGQIGNGPNHVSMQQTAQSTLPTTSMSLSGSGHGTGPGYSHSGPTSQSVPMQG 120 130 140 150 160 170 180 190 200 210 220 230 KIAA06 QGTIGNYVSRTNINMQSNPVSMMQQQAATSHYSSAQGGSQHYQGQSSIAMMGQGSQGSSM ::.:.::::::::::::::::::.::::::::.::::::::::::. :::::::.::.:: gi|263 QGAISNYVSRTNINMQSNPVSMMHQQAATSHYNSAQGGSQHYQGQAPIAMMGQGGQGGSM 180 190 200 210 220 230 240 250 260 270 280 290 KIAA06 MGQRPMAPYRPSQQGSSQQYLGQEEYYGEQYSHSQGAAEPMGQQYYPDGHGDYAYQQSSY :::::::::::::::::::::::::::.::::::::.::::.:::::::::::::::::: gi|263 MGQRPMAPYRPSQQGSSQQYLGQEEYYSEQYSHSQGSAEPMSQQYYPDGHGDYAYQQSSY 240 250 260 270 280 290 300 310 320 330 340 350 KIAA06 TEQSYDRSFEESTQHYYEGGNSQYSQQQAGYQQGAAQQQTYSQQQYPSQQSYPGQQQGYG ::::::::::. ::::::::::::::::::::::.::::::::::::.:::::::::::: gi|263 TEQSYDRSFEDPTQHYYEGGNSQYSQQQAGYQQGTAQQQTYSQQQYPNQQSYPGQQQGYG 300 310 320 330 340 350 360 370 380 390 400 KIAA06 SAQGAPSQYPGYQQGQGQQYGSYRAPQTAPSAQQQRPYGYEQGQYGNYQQ :::::::: .:::::::::::::. ::.::::::::::::::::::::: gi|263 PAQGAPSQYSSYQQGQGQQYGSYRTSQTGPSAQQQRPYGYEQGQYGNYQQ 360 370 380 390 400 >>gi|149034049|gb|EDL88832.1| synovial sarcoma transloca (402 aa) initn: 1591 init1: 1591 opt: 2484 Z-score: 2264.9 bits: 428.0 E(): 1.9e-117 Smith-Waterman score: 2484; 89.801% identity (96.766% similar) in 402 aa overlap (9-404:1-402) 10 20 30 40 50 60 KIAA06 RAEPRAATMSVAFASARPRGKGEVTQQTIQKMLDENHHLIQCILEYQSKGKTAECTQYQQ ::::::::::::::::::::::::::::::::::::.::::::::::::::: gi|149 MSVAFASARPRGKGEVTQQTIQKMLDENHHLIQCILDYQSKGKTAECTQYQQ 10 20 30 40 50 70 80 90 100 110 120 KIAA06 ILHRNLVYLATIADSNQNMQSLLPAPPTQNMNLGPGALTQSGSSQGLHSQGSLSDAISTG ::::::::::::::::::::::::::::::::::::::.::::::::: ::::::..::: gi|149 ILHRNLVYLATIADSNQNMQSLLPAPPTQNMNLGPGALSQSGSSQGLHPQGSLSDTVSTG 60 70 80 90 100 110 130 140 150 160 170 KIAA06 LPPSSLLQGQIGNGPSHVSMQQTAPNTLPTTSMSISG------PGYSHAGPASQGVPMQG :::.::.::::::::.:::::::: .::::::::.:: :::::.::.::.::::: gi|149 LPPASLMQGQIGNGPNHVSMQQTAQSTLPTTSMSMSGSGHGTGPGYSHSGPTSQSVPMQG 120 130 140 150 160 170 180 190 200 210 220 230 KIAA06 QGTIGNYVSRTNINMQSNPVSMMQQQAATSHYSSAQGGSQHYQGQSSIAMMGQGSQGSSM ::.:.::::::::::::::::::.::::::::.::::::::::::. :::::::.::.:: gi|149 QGAISNYVSRTNINMQSNPVSMMHQQAATSHYNSAQGGSQHYQGQAPIAMMGQGGQGGSM 180 190 200 210 220 230 240 250 260 270 280 290 KIAA06 MGQRPMAPYRPSQQGSSQQYLGQEEYYGEQYSHSQGAAEPMGQQYYPDGHGDYAYQQSSY :::::::::::::::::::::::::::.::::::::.::::.::::::::.::::::::: gi|149 MGQRPMAPYRPSQQGSSQQYLGQEEYYSEQYSHSQGSAEPMSQQYYPDGHSDYAYQQSSY 240 250 260 270 280 290 300 310 320 330 340 350 KIAA06 TEQSYDRSFEESTQHYYEGGNSQYSQQQAGYQQGAAQQQTYSQQQYPSQQSYPGQQQGYG ::::::::::. ::::::::::::::::::::::.::::::::::::.:::::::::::: gi|149 TEQSYDRSFEDPTQHYYEGGNSQYSQQQAGYQQGTAQQQTYSQQQYPNQQSYPGQQQGYG 300 310 320 330 340 350 360 370 380 390 400 KIAA06 SAQGAPSQYPGYQQGQGQQYGSYRAPQTAPSAQQQRPYGYEQGQYGNYQQ :::::::: ::::::::::::::. ::.::::::::::::::::::::: gi|149 PAQGAPSQYSGYQQGQGQQYGSYRTSQTGPSAQQQRPYGYEQGQYGNYQQ 360 370 380 390 400 >>gi|26332743|dbj|BAC30089.1| unnamed protein product [M (402 aa) initn: 1591 init1: 1591 opt: 2480 Z-score: 2261.2 bits: 427.3 E(): 3e-117 Smith-Waterman score: 2480; 89.552% identity (96.766% similar) in 402 aa overlap (9-404:1-402) 10 20 30 40 50 60 KIAA06 RAEPRAATMSVAFASARPRGKGEVTQQTIQKMLDENHHLIQCILEYQSKGKTAECTQYQQ ::::::::::::::::::::::::::::::::::::.::::::::::::::: gi|263 MSVAFASARPRGKGEVTQQTIQKMLDENHHLIQCILDYQSKGKTAECTQYQQ 10 20 30 40 50 70 80 90 100 110 120 KIAA06 ILHRNLVYLATIADSNQNMQSLLPAPPTQNMNLGPGALTQSGSSQGLHSQGSLSDAISTG ::::::::::::::::::::::::::::::::::::::.::::::::: ::::::..::: gi|263 ILHRNLVYLATIADSNQNMQSLLPAPPTQNMNLGPGALSQSGSSQGLHPQGSLSDTVSTG 60 70 80 90 100 110 130 140 150 160 170 KIAA06 LPPSSLLQGQIGNGPSHVSMQQTAPNTLPTTSMSISG------PGYSHAGPASQGVPMQG :::.::.::::::::.:.:::::: .::::::::.:: :::::.::.::.::::: gi|263 LPPASLMQGQIGNGPNHLSMQQTAQSTLPTTSMSLSGSGHGTGPGYSHSGPTSQSVPMQG 120 130 140 150 160 170 180 190 200 210 220 230 KIAA06 QGTIGNYVSRTNINMQSNPVSMMQQQAATSHYSSAQGGSQHYQGQSSIAMMGQGSQGSSM ::.:.::::::::::::::::::.::::::::.::::::::::::. :::::::.::.:: gi|263 QGAISNYVSRTNINMQSNPVSMMHQQAATSHYNSAQGGSQHYQGQAPIAMMGQGGQGGSM 180 190 200 210 220 230 240 250 260 270 280 290 KIAA06 MGQRPMAPYRPSQQGSSQQYLGQEEYYGEQYSHSQGAAEPMGQQYYPDGHGDYAYQQSSY :::::::::::::::::::::::::::.::::::::.::::.:::::::::::::::::: gi|263 MGQRPMAPYRPSQQGSSQQYLGQEEYYSEQYSHSQGSAEPMSQQYYPDGHGDYAYQQSSY 240 250 260 270 280 290 300 310 320 330 340 350 KIAA06 TEQSYDRSFEESTQHYYEGGNSQYSQQQAGYQQGAAQQQTYSQQQYPSQQSYPGQQQGYG ::::::::::. ::::::::::::::::::::::.::::::::::::.:::::::::::: gi|263 TEQSYDRSFEDPTQHYYEGGNSQYSQQQAGYQQGTAQQQTYSQQQYPNQQSYPGQQQGYG 300 310 320 330 340 350 360 370 380 390 400 KIAA06 SAQGAPSQYPGYQQGQGQQYGSYRAPQTAPSAQQQRPYGYEQGQYGNYQQ :::::::: .:::::::::::::. ::.::::::::::::::::::::: gi|263 PAQGAPSQYSSYQQGQGQQYGSYRTSQTGPSAQQQRPYGYEQGQYGNYQQ 360 370 380 390 400 404 residues in 1 query sequences 2693465022 residues in 7827732 library sequences Tcomplib [34.26] (8 proc) start: Thu Mar 5 15:08:22 2009 done: Thu Mar 5 15:12:59 2009 Total Scan time: 1463.020 Total Display time: 0.130 Function used was FASTA [version 34.26.5 April 26, 2007]