hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-10222341/chunk_1/iprscan-20080502-10222341.nocrc
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Query sequence: KIAA0693
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF05030.3.fs SSXT protein (N-terminal region)               174.6    3.8e-52   1
PF05030.3.ls SSXT protein (N-terminal region)               176.5    6.3e-50   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF05030.3.fs   1/1      19    84 ..     1    78 []   174.6  3.8e-52
PF05030.3.ls   1/1      19    84 ..     1    78 []   176.5  6.3e-50

Alignments of top-scoring domains:
PF05030.3.fs: domain 1 of 1, from 19 to 84: score 174.6, E = 3.8e-52
                   *->RGkanmqGGGGGGvPqkVnQsTIQKlLDENsrLIqcIqEYqnkGrAd
                      RGk+            +V+Q+TIQK+LDEN++LIqcI+EYq+kG+++
    KIAA0693    19    RGKG------------EVTQQTIQKMLDENHHLIQCILEYQSKGKTA 53   

                   ECiqYQqvLHRNLvYLAtlADpnlnsqlklp<-*
                   EC+qYQq+LHRNLvYLAt+AD+n+n+q++lp   
    KIAA0693    54 ECTQYQQILHRNLVYLATIADSNQNMQSLLP    84   

PF05030.3.ls: domain 1 of 1, from 19 to 84: score 176.5, E = 6.3e-50
                   *->RGkanmqGGGGGGvPqkVnQsTIQKlLDENsrLIqcIqEYqnkGrAd
                      RGk+            +V+Q+TIQK+LDEN++LIqcI+EYq+kG+++
    KIAA0693    19    RGKG------------EVTQQTIQKMLDENHHLIQCILEYQSKGKTA 53   

                   ECiqYQqvLHRNLvYLAtlADpnlnsqlklp<-*
                   EC+qYQq+LHRNLvYLAt+AD+n+n+q++lp   
    KIAA0693    54 ECTQYQQILHRNLVYLATIADSNQNMQSLLP    84   

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