hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-10271375/chunk_1/iprscan-20080502-10271375.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA0696 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00400.22.ls WD domain, G-beta repeat 256.6 4.8e-74 7 PF00400.22.fs WD domain, G-beta repeat 243.2 5.2e-70 7 PF00646.23.fs F-box domain 32.2 1.6e-07 1 PF00646.23.ls F-box domain 34.2 4.3e-07 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00646.23.fs 1/1 126 177 .. 1 46 [] 32.2 1.6e-07 PF00646.23.ls 1/1 126 177 .. 1 46 [] 34.2 4.3e-07 PF00400.22.ls 1/7 238 274 .. 1 38 [] 23.7 0.00062 PF00400.22.fs 1/7 238 274 .. 1 38 [] 21.7 3.7e-05 PF00400.22.ls 2/7 278 314 .. 1 38 [] 46.0 1.2e-10 PF00400.22.fs 2/7 278 314 .. 1 38 [] 44.0 1.9e-11 PF00400.22.ls 3/7 318 354 .. 1 38 [] 34.8 2.9e-07 PF00400.22.fs 3/7 318 354 .. 1 38 [] 32.8 2.8e-08 PF00400.22.ls 4/7 361 397 .. 1 38 [] 38.6 2e-08 PF00400.22.fs 4/7 361 397 .. 1 38 [] 36.7 2.3e-09 PF00400.22.ls 5/7 401 437 .. 1 38 [] 38.2 2.7e-08 PF00400.22.fs 5/7 401 437 .. 1 38 [] 36.3 3e-09 PF00400.22.ls 6/7 441 477 .. 1 38 [] 46.0 1.2e-10 PF00400.22.fs 6/7 441 477 .. 1 38 [] 44.1 1.9e-11 PF00400.22.ls 7/7 490 526 .. 1 38 [] 29.4 1.2e-05 PF00400.22.fs 7/7 490 526 .. 1 38 [] 27.5 9e-07 Alignments of top-scoring domains: PF00646.23.fs: domain 1 of 1, from 126 to 177: score 32.2, E = 1.6e-07 *->fslldLPde....llleIlsrLdpkdllrlslVSkrwrslvdsl.lw + + LP+ + +++ ++Ils+Ld+++l+++ lV+k w+++++ lw KIAA0696 126 DFITALPEQgldhIAENILSYLDARSLCAAELVCKEWQRVISEGmLW 172 k.kll<-* k+ + KIAA0696 173 KkLIE 177 PF00646.23.ls: domain 1 of 1, from 126 to 177: score 34.2, E = 4.3e-07 *->fslldLPde....llleIlsrLdpkdllrlslVSkrwrslvdsl.lw + + LP+ + +++ ++Ils+Ld+++l+++ lV+k w+++++ lw KIAA0696 126 DFITALPEQgldhIAENILSYLDARSLCAAELVCKEWQRVISEGmLW 172 k.kll<-* k+ + KIAA0696 173 KkLIE 177 PF00400.22.ls: domain 1 of 7, from 238 to 274: score 23.7, E = 0.00062 *->geck.vl.gHtstVtcvafspdsgpllasgSrDgtikiWd<-* + ++ + +++V+c+ ++ + ++sg rD++ikiWd KIAA0696 238 LQRIqCRsENSKGVYCLQYDDE---KIISGLRDNSIKIWD 274 PF00400.22.fs: domain 1 of 7, from 238 to 274: score 21.7, E = 3.7e-05 *->geck.vl.gHtstVtcvafspdsgpllasgSrDgtikiWd<-* + ++ + +++V+c+ ++ + ++sg rD++ikiWd KIAA0696 238 LQRIqCRsENSKGVYCLQYDDE---KIISGLRDNSIKIWD 274 PF00400.22.ls: domain 2 of 7, from 278 to 314: score 46.0, E = 1.2e-10 *->geck.vl.gHtstVtcvafspdsgpllasgSrDgtikiWd<-* ec++vl+gHt++V c+ ++ ++++gS+D t+++Wd KIAA0696 278 LECLkVLtGHTGSVLCLQYDER---VIVTGSSDSTVRVWD 314 PF00400.22.fs: domain 2 of 7, from 278 to 314: score 44.0, E = 1.9e-11 *->geck.vl.gHtstVtcvafspdsgpllasgSrDgtikiWd<-* ec++vl+gHt++V c+ ++ ++++gS+D t+++Wd KIAA0696 278 LECLkVLtGHTGSVLCLQYDER---VIVTGSSDSTVRVWD 314 PF00400.22.ls: domain 3 of 7, from 318 to 354: score 34.8, E = 2.9e-07 *->geck.vl.gHtstVtcvafspdsgpllasgSrDgtikiWd<-* ge++++l +H+ +V ++fs l++++S D++i +Wd KIAA0696 318 GEVLnTLiHHNEAVLHLRFSNG---LMVTCSKDRSIAVWD 354 PF00400.22.fs: domain 3 of 7, from 318 to 354: score 32.8, E = 2.8e-08 *->geck.vl.gHtstVtcvafspdsgpllasgSrDgtikiWd<-* ge++++l +H+ +V ++fs l++++S D++i +Wd KIAA0696 318 GEVLnTLiHHNEAVLHLRFSNG---LMVTCSKDRSIAVWD 354 PF00400.22.ls: domain 4 of 7, from 361 to 397: score 38.6, E = 2e-08 *->geck.vl.gHtstVtcvafspdsgpllasgSrDgtikiWd<-* ++ +vl gH ++V+ v+f+ +++s+S D+tik+W+ KIAA0696 361 ITLRrVLvGHRAAVNVVDFDDK---YIVSASGDRTIKVWS 397 PF00400.22.fs: domain 4 of 7, from 361 to 397: score 36.7, E = 2.3e-09 *->geck.vl.gHtstVtcvafspdsgpllasgSrDgtikiWd<-* ++ +vl gH ++V+ v+f+ +++s+S D+tik+W+ KIAA0696 361 ITLRrVLvGHRAAVNVVDFDDK---YIVSASGDRTIKVWS 397 PF00400.22.ls: domain 5 of 7, from 401 to 437: score 38.2, E = 2.7e-08 *->geck.vl.gHtstVtcvafspdsgpllasgSrDgtikiWd<-* +e +++l+gH+ ++ c+ + l++sgS+D+ti++Wd KIAA0696 401 CEFVrTLnGHKRGIACLQYRDR---LVVSGSSDNTIRLWD 437 PF00400.22.fs: domain 5 of 7, from 401 to 437: score 36.3, E = 3e-09 *->geck.vl.gHtstVtcvafspdsgpllasgSrDgtikiWd<-* +e +++l+gH+ ++ c+ + l++sgS+D+ti++Wd KIAA0696 401 CEFVrTLnGHKRGIACLQYRDR---LVVSGSSDNTIRLWD 437 PF00400.22.ls: domain 6 of 7, from 441 to 477: score 46.0, E = 1.2e-10 *->geck.vl.gHtstVtcvafspdsgpllasgSrDgtikiWd<-* g c++vl+gH+ V+c++f+ +++sg Dg+ik+Wd KIAA0696 441 GACLrVLeGHEELVRCIRFDNK---RIVSGAYDGKIKVWD 477 PF00400.22.fs: domain 6 of 7, from 441 to 477: score 44.1, E = 1.9e-11 *->geck.vl.gHtstVtcvafspdsgpllasgSrDgtikiWd<-* g c++vl+gH+ V+c++f+ +++sg Dg+ik+Wd KIAA0696 441 GACLrVLeGHEELVRCIRFDNK---RIVSGAYDGKIKVWD 477 PF00400.22.ls: domain 7 of 7, from 490 to 526: score 29.4, E = 1.2e-05 *->geck.vl.gHtstVtcvafspdsgpllasgSrDgtikiWd<-* c+++l H++ V + f+ +++s+S+D ti iWd KIAA0696 490 TLCLrTLvEHSGRVFRLQFDEF---QIISSSHDDTILIWD 526 PF00400.22.fs: domain 7 of 7, from 490 to 526: score 27.5, E = 9e-07 *->geck.vl.gHtstVtcvafspdsgpllasgSrDgtikiWd<-* c+++l H++ V + f+ +++s+S+D ti iWd KIAA0696 490 TLCLrTLvEHSGRVFRLQFDEF---QIISSSHDDTILIWD 526 //