HUGE

Gene/Protein Characteristic Table for KIAA0701

Link to : Rouge \| GTOP \| SWISS-PROT/TrEMBL \| GeneCards\| RefDIC
Features : DNA sequence \| Protein sequence \| Expression \| Mapping

Product ID :	ORK05617
Accession No. :	AB014601
Description :
HUGO Gene Name :	UHRF1 binding protein 1-like (UHRF1BP1L)
Clone Name :	hg01611s1 [Vector Info]
Source :	Human adult brain
Note :	We replaced hg01611, former representative clones for KIAA0701 with hg01611s1. (2002/5/10)

Features of the cloned DNA sequence	Description

Length: 4625 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis) for :
cloned DNA seq.
Warning for N-terminal truncation:
YES

Warning for coding interruption:
NO

Integrity of 3' end

Length of 3'UTR 560 bp

Genome contig ID gi89161190r_98854985
PolyA signal sequence
(AATAAA,-27)
+----*----+----*----+----*----+----
AGCAGATCAATAAACTATATAATTAATGGGTTTGG
Flanking genome sequence
(100000 - 99951)
----+----*----+----*----+----*----+----*----+----*
AAAATCATCACCCTACTGAACTTACAAAATATCTTGAAAATGTGAAAAAT

Ensembl ContigView (Add our DAS server as a DAS source)

Chr f/r start end exon identity class

ContigView(URL based/DAS) 12 r 98954985 99016452 17 100.0 Terminal No-hit

Features of the protein sequence	Description

Length: 1354 aa

Result of homology search against nr database (FASTA output, Multiple alignment)

Entry	ID%	Protein	Source
XP_001152538	99.4	hypothetical pr...	Pan troglodytes
XP_001152665	99.4	hypothetical pr...	Pan troglodytes
XP_001152470	99.0	hypothetical pr...	Pan troglodytes
XP_001088354	98.5	similar to CG31...	Macaca mulatta
XP_522505	98.4	hypothetical pr...	Pan troglodytes

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of homology search against other HUGE database (FASTA output)
No significant homologues

Result of motif / domain search (InterProScan and SOSUI)

Motif_DB interpro_ID From To Entry Definition

None - - - - -

Motif_DB	interpro_ID	From	To	Entry	Definition
None	-	-	-	-	-

Prediction of transmembrane (TM) segments

Method No. N terminal transmembrane region C terminal type length

- - - - - - -

Method	No.	N terminal	transmembrane region	C terminal	type	length
-	-	-	-	-	-	-

Expression profile	Description

: RT-PCR Description

Experimental conditions

Primer_f
: GATGTAGAAGCTGTAACTGGC

Primer_r
: TACCACTGGGCTCACACTTTC

PCR conditions
: 95 °C30 sec55 °C30 sec72 °C60 sec30 cycles

RT-PCR	Description

RH mapping information	Description

Chromosome No.

: 12

Experimental conditions

Panel name	: GeneBridge 4
Primer_f	: GATGTAGAAGCTGTAACTGGC
Primer_r	: TACCACTGGGCTCACACTTTC
PCR product length	: 153 bp
PCR conditions	: 95 °C15 sec64 °C60 sec30 cycles

How to obtain KIAA clone(s) Back to the HUGE Protein Database homepage

	cloned DNA seq.
Warning for N-terminal truncation:	YES
Warning for coding interruption:	NO

Length of 3'UTR	560 bp
Genome contig ID	gi89161190r_98854985
PolyA signal sequence (AATAAA,-27)	+--------+--------+----*----+---- AGCAGATCAATAAACTATATAATTAATGGGTTTGG
Flanking genome sequence (100000 - 99951)	----+--------+--------+--------+--------+----* AAAATCATCACCCTACTGAACTTACAAAATATCTTGAAAATGTGAAAAAT

	Chr	f/r	start	end	exon	identity	class
ContigView(URL based/DAS)	12	r	98954985	99016452	17	100.0	Terminal No-hit

Gene/Protein Characteristic Table for KIAA0701

Features of the cloned DNA sequence

Features of the protein sequence

Expression profile

RH mapping information