hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-10405651/chunk_1/iprscan-20080502-10405651.nocrc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query sequence: KIAA0704
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model        Description                                Score    E-value  N 
--------     -----------                                -----    ------- ---
PF01237.9.fs Oxysterol-binding protein                  287.4    2.6e-83   2
PF01237.9.ls Oxysterol-binding protein                  273.2    4.7e-79   1
PF00169.19.fs PH domain                                   41.4    3.8e-12   1
PF00169.19.ls PH domain                                   43.4    7.3e-10   1

Parsed for domains:
Model        Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------     ------- ----- -----    ----- -----      -----  -------
PF00169.19.fs   1/1      84   178 ..     1    92 []    41.4  3.8e-12
PF00169.19.ls   1/1      84   178 ..     1    92 []    43.4  7.3e-10
PF01237.9.ls   1/1     520   907 ..     1   440 []   273.2  4.7e-79
PF01237.9.fs   1/2     554   792 ..    34   291 ..   262.0  1.1e-75
PF01237.9.fs   2/2     815   907 ..   341   440 .]    25.4  3.5e-07

Alignments of top-scoring domains:
PF00169.19.fs: domain 1 of 1, from 84 to 178: score 41.4, E = 3.8e-12
                   *->vikeGwLlkkg..gkkswkkRyfvLfddvLlyykdkk....kkpkgs
                      ++ +G+Llkk +  +k+w+kR+f L  + L y k+ ++ +++k+ g+
    KIAA0704    84    PVQKGFLLKKRkwPLKGWHKRFFYLDKGILKYAKSQTdierEKLHGC 130  

                   ipLsgiqvtkvpdnkrkncFeirt.dretlllqaeseeerkeWvkaiqsa
                   i++ g++v+ v++     c+ + t+++  ++l+ +see   eWv+ ++ +
    KIAA0704   131 IDV-GLSVMSVKK--SSKCIDLDTeEH-IYHLKVKSEEVFDEWVSKLRHH 176  

                   ir<-*
                        
    KIAA0704   177 RM    178  

PF00169.19.ls: domain 1 of 1, from 84 to 178: score 43.4, E = 7.3e-10
                   *->vikeGwLlkkg..gkkswkkRyfvLfddvLlyykdkk....kkpkgs
                      ++ +G+Llkk +  +k+w+kR+f L  + L y k+ ++ +++k+ g+
    KIAA0704    84    PVQKGFLLKKRkwPLKGWHKRFFYLDKGILKYAKSQTdierEKLHGC 130  

                   ipLsgiqvtkvpdnkrkncFeirt.dretlllqaeseeerkeWvkaiqsa
                   i++ g++v+ v++     c+ + t+++  ++l+ +see   eWv+ ++ +
    KIAA0704   131 IDV-GLSVMSVKK--SSKCIDLDTeEH-IYHLKVKSEEVFDEWVSKLRHH 176  

                   ir<-*
                        
    KIAA0704   177 RM    178  

PF01237.9.ls: domain 1 of 1, from 520 to 907: score 273.2, E = 4.7e-79
                   *->kSqhsSsssltsklkfilsepkdltr.RldipeeslspisLwsisql
                      +       + +   + ++ e k++ r+ l +p  s s+isLw i+++
    KIAA0704   520    SNDLDNERQTLGPVLDSGREAKSRRRtCLPAPCPSSSNISLWNILRN 566  

                   wvGkdLskitlPvfinEpkSmLqrvtedleYpelLdkAaaredsltrWfl
                   ++GkdLsk ++Pv  nEp+  Lqr+ e+leY+elLdkAa+ + +l+r ++
    KIAA0704   567 NIGKDLSKVAMPVELNEPLNTLQRLCEELEYSELLDKAAQIPSPLER-MV 615  

                   yvaastlssyset.trrvkKPlNPlLGEtFelkrendElpnkgqyrllsE
                   yvaa+  s y+++  r+ +KP+NP+LGEt e +re+    +   + ++sE
    KIAA0704   616 YVAAFAISAYASSyYRAGSKPFNPVLGETYECIRED---KG---FQFFSE 659  

                   QVSHHPPvsAffaespkskwrvqgevqikskFlGkslavmkeGltvhtil
                   QVSHHPP+sA +aes +    + + v  k kF+Gks+++++ G+  h+ l
    KIAA0704   660 QVSHHPPISACHAESRN--FVFWQDVRWKNKFWGKSMEIVPIGT-THVTL 706  

                   dikdingkpEtYtwtqPnttveGILvGkpfvElSGdesvin..sstGdkc
                   +  +      +++w +++  +++IL G +++E   +e vi++ +    +c
    KIAA0704   707 PVFG-----DHFEWNKVTSCIHNILSGQRWIEH-YGEIVIKnlHDDSCYC 750  

                   vIeFktkGyfSGkkdsfkgrivkdpdgnkdKEkklytlsGkWndsmyikK
                      F ++ y S  + +++g+++ d +g     k+   l GkW +s+y+  
    KIAA0704   751 KVNFIKAKYWSTNAHEIEGTVF-DRSG-----KAVHRLFGKWHESIYCGG 794  

                   vqsksegelflDahktphealkvrpLeeqhelesrkaWkkvadalkvgnl
                     s             ++    v           ++a  +  + +  + +
    KIAA0704   795 GSS-------------SAC---V-----------WRANPMPKGYEQYYSF 817  

                   tvftktkneleerqRpllkptesrgvedqralfkrledkedldkeekkek
                   t f++++ne ++  + ll+pt+ r ++dqr l++++ + ++ +k++ +  
    KIAA0704   818 TQFALELNEMDPSSKSLLPPTDTRFRPDQRFLEEGNLEEAEIQKQRIEQL 867  

                   peaddkerkqkgslyepkwfvpsgqpvtdKeklyikarkeyWefrKk<-*
                   +++  +  +    + +p  f +        ++ ++++++ y e rK    
    KIAA0704   868 QRERRRVLEENHVEHQPRFFRK-----S--DDDSWVSNGTYLELRKD    907  

PF01237.9.fs: domain 1 of 2, from 554 to 792: score 262.0, E = 1.1e-75
                   *->slspisLwsisqlwvGkdLskitlPvfinEpkSmLqrvtedleYpel
                      s s+isLw i+++++GkdLsk ++Pv  nEp+  Lqr+ e+leY+el
    KIAA0704   554    SSSNISLWNILRNNIGKDLSKVAMPVELNEPLNTLQRLCEELEYSEL 600  

                   LdkAaaredsltrWflyvaastlssyset.trrvkKPlNPlLGEtFelkr
                   LdkAa+ + +l+r ++yvaa+  s y+++  r+ +KP+NP+LGEt e +r
    KIAA0704   601 LDKAAQIPSPLER-MVYVAAFAISAYASSyYRAGSKPFNPVLGETYECIR 649  

                   endElpnkgqyrllsEQVSHHPPvsAffaespkskwrvqgevqikskFlG
                   e+    +   + ++sEQVSHHPP+sA +aes +    + + v  k kF+G
    KIAA0704   650 ED---KG---FQFFSEQVSHHPPISACHAESRN--FVFWQDVRWKNKFWG 691  

                   kslavmkeGltvhtildikdingkpEtYtwtqPnttveGILvGkpfvElS
                   ks+++++ G+  h+ l+  +      +++w +++  +++IL G +++E  
    KIAA0704   692 KSMEIVPIGT-THVTLPVFG-----DHFEWNKVTSCIHNILSGQRWIEH- 734  

                   Gdesvin..sstGdkcvIeFktkGyfSGkkdsfkgrivkdpdgnkdKEkk
                    +e vi++ +    +c   F ++ y S  + +++g+++ d +g     k+
    KIAA0704   735 YGEIVIKnlHDDSCYCKVNFIKAKYWSTNAHEIEGTVF-DRSG-----KA 778  

                   lytlsGkWndsmyi<-*
                      l GkW +s+y+   
    KIAA0704   779 VHRLFGKWHESIYC    792  

PF01237.9.fs: domain 2 of 2, from 815 to 907: score 25.4, E = 3.5e-07
                   *->gnltvftktkneleerqRpllkptesrgvedqralfkrledkedldk
                      + +t f++++ne ++  + ll+pt+ r ++dqr l++++ + ++ +k
    KIAA0704   815    YSFTQFALELNEMDPSSKSLLPPTDTRFRPDQRFLEEGNLEEAEIQK 861  

                   eekkekpeaddkerkqkgslyepkwfvpsgqpvtdKeklyikarkeyWef
                   ++ +  +++  +  +    + +p  f +        ++ ++++++ y e 
    KIAA0704   862 QRIEQLQRERRRVLEENHVEHQPRFFRK-----S--DDDSWVSNGTYLEL 904  

                   rKk<-*
                   rK    
    KIAA0704   905 RKD    907  

//