hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/smart.HMMs.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-10405651/chunk_1/iprscan-20080502-10405651.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA0704 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- SM00233 52.8 4.3e-11 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- SM00233 1/1 84 180 .. 1 82 [] 52.8 4.3e-11 Alignments of top-scoring domains: SM00233: domain 1 of 1, from 84 to 180: score 52.8, E = 4.3e-11 *->vikeGwLlkks...k.swkkryfvLfngvLlyyksk......kpkgs ++ +G+Llkk + ++++w+kr+f+L+ g L y ks ++ +++k+ g+ KIAA0704 84 PVQKGFLLKKRkwpLkGWHKRFFYLDKGILKYAKSQtdiereKLHGC 130 ipLsgcsvre.p...cFeivt.drtlllqAeseeereeWvealqsaiaka i++ +++++++c+ + t+++ ++l+ +see ++eWv+ l+ + KIAA0704 131 IDVGLSVMSVkKsskCIDLDTeEHIYHLKVKSEEVFDEWVSKLRHHRMYR 180 <-* KIAA0704 - - //