hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-10423829/chunk_1/iprscan-20080502-10423829.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA0705 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00595.14.ls PDZ domain (Also known as DHR or GLGF) 263.4 4.1e-76 6 PF00595.14.fs PDZ domain (Also known as DHR or GLGF) 255.7 8.9e-74 6 PF00397.16.ls WW domain 96.6 6.7e-26 2 PF00397.16.fs WW domain 92.6 5.7e-25 2 PF00625.11.fs Guanylate kinase 42.5 3e-11 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00595.14.ls 1/6 59 140 .. 1 86 [] 25.4 0.00018 PF00595.14.fs 1/6 59 140 .. 1 86 [] 23.4 6.4e-06 PF00625.11.fs 1/1 184 227 .. 1 45 [. 42.5 3e-11 PF00397.16.fs 1/2 346 375 .. 1 30 [] 52.1 1.3e-13 PF00397.16.ls 1/2 346 375 .. 1 30 [] 54.1 4.2e-13 PF00397.16.fs 2/2 392 421 .. 1 30 [] 40.5 2.3e-10 PF00397.16.ls 2/2 392 421 .. 1 30 [] 42.5 1.3e-09 PF00595.14.fs 2/6 468 534 .. 1 72 [. 31.7 3e-08 PF00595.14.ls 2/6 468 549 .. 1 86 [] 30.7 4.7e-06 PF00595.14.ls 3/6 647 722 .. 1 86 [] 29.5 1.1e-05 PF00595.14.fs 3/6 681 722 .. 45 86 .] 28.7 2.2e-07 PF00595.14.fs 4/6 806 887 .. 1 86 [] 41.3 6.1e-11 PF00595.14.ls 4/6 806 887 .. 1 86 [] 43.2 7.9e-10 PF00595.14.ls 5/6 948 1035 .. 1 86 [] 61.1 3.3e-15 PF00595.14.fs 5/6 948 1035 .. 1 86 [] 59.1 5.8e-16 PF00595.14.ls 6/6 1175 1254 .. 1 86 [] 73.4 6.6e-19 PF00595.14.fs 6/6 1175 1254 .. 1 86 [] 71.5 2e-19 Alignments of top-scoring domains: PF00595.14.ls: domain 1 of 6, from 59 to 140: score 25.4, E = 0.00018 *->evtlekedkrgglGfsikggsdkgadkgifvsevlpGsgaAeagGrL e ++ ++ g lGf +kgg ++g + + ev pG+ a e g++L KIAA0705 59 ESVIGRN-PEGQLGFELKGGAENG--QFPYLGEVKPGKVAYESGSKL 102 qaGDqIlsvNGqdlenlsheeavlalkgsggsevtLtvl<-* +l+vN +++++l+ ++ +++k +++ +++L+ KIAA0705 103 VSEELLLEVNETPVAGLTIRDVLAVIKHCKD-PLRLKCV 140 PF00595.14.fs: domain 1 of 6, from 59 to 140: score 23.4, E = 6.4e-06 *->evtlekedkrgglGfsikggsdkgadkgifvsevlpGsgaAeagGrL e ++ ++ g lGf +kgg ++g + + ev pG+ a e g++L KIAA0705 59 ESVIGRN-PEGQLGFELKGGAENG--QFPYLGEVKPGKVAYESGSKL 102 qaGDqIlsvNGqdlenlsheeavlalkgsggsevtLtvl<-* +l+vN +++++l+ ++ +++k +++ +++L+ KIAA0705 103 VSEELLLEVNETPVAGLTIRDVLAVIKHCKD-PLRLKCV 140 PF00625.11.fs: domain 1 of 1, from 184 to 227: score 42.5, E = 3e-11 *->TRpPRpgEvdGkDYhFVsSrEemekdIsaneFLEyaefnGNyYGT<- TRp +gEv G+DY F++ +E ++++ + ++ LE +++++NyYGT KIAA0705 184 TRPHKEGEVPGVDYIFIT-VEDFMELEKSGALLESGTYEDNYYGT 227 * KIAA0705 - - PF00397.16.fs: domain 1 of 2, from 346 to 375: score 52.1, E = 1.3e-13 *->lppgWeertdpdGrpYYyNhnTktTqWekP<-* lp +We++++++G +Y+++hnTktT+W +P KIAA0705 346 LPDNWEMAYTEKGEVYFIDHNTKTTSWLDP 375 PF00397.16.ls: domain 1 of 2, from 346 to 375: score 54.1, E = 4.2e-13 *->lppgWeertdpdGrpYYyNhnTktTqWekP<-* lp +We++++++G +Y+++hnTktT+W +P KIAA0705 346 LPDNWEMAYTEKGEVYFIDHNTKTTSWLDP 375 PF00397.16.fs: domain 2 of 2, from 392 to 421: score 40.5, E = 2.3e-10 *->lppgWeertdpdGrpYYyNhnTktTqWekP<-* lp gWe++ dp +YY++h++++Tq+e+P KIAA0705 392 LPYGWEKIDDPIYGTYYVDHINRRTQFENP 421 PF00397.16.ls: domain 2 of 2, from 392 to 421: score 42.5, E = 1.3e-09 *->lppgWeertdpdGrpYYyNhnTktTqWekP<-* lp gWe++ dp +YY++h++++Tq+e+P KIAA0705 392 LPYGWEKIDDPIYGTYYVDHINRRTQFENP 421 PF00595.14.fs: domain 2 of 6, from 468 to 534: score 31.7, E = 3e-08 *->evtlekedkrgglGfsikggsdkgadkgifvsevlpGsgaAeagGrL + tl+k ++ g+Gf+i gg++ +d+ + v++v+p+ g+A+++G+ KIAA0705 468 STTLKK--SNMGFGFTIIGGDE--PDEFLQVKSVIPD-GPAAQDGKM 509 qaGDqIlsvNGqdlenlsheeavla<-* + GD+I+ +N + + +++h+++v++ KIAA0705 510 ETGDVIVYINEVCVLGHTHADVVKL 534 PF00595.14.ls: domain 2 of 6, from 468 to 549: score 30.7, E = 4.7e-06 *->evtlekedkrgglGfsikggsdkgadkgifvsevlpGsgaAeagGrL + tl+k ++ g+Gf+i gg++ +d+ + v++v+p+ g+A+++G+ KIAA0705 468 STTLKK--SNMGFGFTIIGGDE--PDEFLQVKSVIPD-GPAAQDGKM 509 qaGDqIlsvNGqdlenlsheeavlalkgsgg.sevtLtvl<-* + GD+I+ +N + + +++h+++v++ ++ + + +v L++ KIAA0705 510 ETGDVIVYINEVCVLGHTHADVVKLFQSVPIgQSVNLVLC 549 PF00595.14.ls: domain 3 of 6, from 647 to 722: score 29.5, E = 1.1e-05 *->evtlekedkrgglGfsikggsdkgadkgifvsevlpGsgaAeagGrL ++t+ k + +g+Gf+i+ + + + + ++G + G L KIAA0705 647 TLTIVK--GAQGFGFTIADSPTG---QRVKQILDIQG-----CPG-L 682 qaGDqIlsvNGqdlenlsheeavlalkgsgg.sevtLtvl<-* ++GD I+++N+q++ nlsh e+v++lk+++ +se +L + KIAA0705 683 CEGDLIVEINQQNVQNLSHTEVVDILKDCPIgSETSLIIH 722 PF00595.14.fs: domain 3 of 6, from 681 to 722: score 28.7, E = 2.2e-07 *->GrLqaGDqIlsvNGqdlenlsheeavlalkgsgg.sevtLtvl<-* G L++GD I+++N+q++ nlsh e+v++lk+++ +se +L + KIAA0705 681 G-LCEGDLIVEINQQNVQNLSHTEVVDILKDCPIgSETSLIIH 722 PF00595.14.fs: domain 4 of 6, from 806 to 887: score 41.3, E = 6.1e-11 *->evtlekedkrgglGfsikggsdkgadkgifvsevlpGsgaAeagGrL +v+l + +g+Gf+i gg++ g ++i + v+++ g+A+++GrL KIAA0705 806 DVHLRR--MESGFGFRILGGDEPG--QPILIGAVIAM-GSADRDGRL 847 qaGDqIlsvNGqdlenlsheeavlalkgsgg.sevtLtvl<-* ++GD ++ v+G ++++ +h +++++ + +++v Ltv+ KIAA0705 848 HPGDELVYVDGIPVAGKTHRYVIDLMHHAARnGQVNLTVR 887 PF00595.14.ls: domain 4 of 6, from 806 to 887: score 43.2, E = 7.9e-10 *->evtlekedkrgglGfsikggsdkgadkgifvsevlpGsgaAeagGrL +v+l + +g+Gf+i gg++ g ++i + v+++ g+A+++GrL KIAA0705 806 DVHLRR--MESGFGFRILGGDEPG--QPILIGAVIAM-GSADRDGRL 847 qaGDqIlsvNGqdlenlsheeavlalkgsgg.sevtLtvl<-* ++GD ++ v+G ++++ +h +++++ + +++v Ltv+ KIAA0705 848 HPGDELVYVDGIPVAGKTHRYVIDLMHHAARnGQVNLTVR 887 PF00595.14.ls: domain 5 of 6, from 948 to 1035: score 61.1, E = 3.3e-15 *->evtlekedkrgglGfsikggsdkga......dkgifvsevlpGsgaA +v++++ +++g+Gf i + s ++++++++ + + +++ Gs+a+ KIAA0705 948 DVVIHRK-ENEGFGFVIIS-SLNRPesgstiTVPHKIGRIIDGSPAD 992 eagGrLqaGDqIlsvNGqdlenlsheeavlalkgsggsevtLtvl<-* +++ L++GD+Il+vNGq++ n++h+++v+++k++g +vtL ++ KIAA0705 993 RCAK-LKVGDRILAVNGQSIINMPHADIVKLIKDAGL-SVTLRII 1035 PF00595.14.fs: domain 5 of 6, from 948 to 1035: score 59.1, E = 5.8e-16 *->evtlekedkrgglGfsikggsdkga......dkgifvsevlpGsgaA +v++++ +++g+Gf i + s ++++++++ + + +++ Gs+a+ KIAA0705 948 DVVIHRK-ENEGFGFVIIS-SLNRPesgstiTVPHKIGRIIDGSPAD 992 eagGrLqaGDqIlsvNGqdlenlsheeavlalkgsggsevtLtvl<-* +++ L++GD+Il+vNGq++ n++h+++v+++k++g +vtL ++ KIAA0705 993 RCAK-LKVGDRILAVNGQSIINMPHADIVKLIKDAGL-SVTLRII 1035 PF00595.14.ls: domain 6 of 6, from 1175 to 1254: score 73.4, E = 6.6e-19 *->evtlekedkrgglGfsikggsdkgadkgifvsevlpGsgaAeagGrL +v +ek + g+Gfsi+gg + + + ++v ++ ++ g+A + Gr KIAA0705 1175 TVDMEK--GAKGFGFSIRGGREYK--MDLYVLRLAED-GPAIRNGRM 1216 qaGDqIlsvNGqdlenlsheeavlalkgsggsevtLtvl<-* ++GDqI+++NG+++++++h++a++++k+ g v+L+++ KIAA0705 1217 RVGDQIIEINGESTRDMTHARAIELIKSGGR-RVRLLLK 1254 PF00595.14.fs: domain 6 of 6, from 1175 to 1254: score 71.5, E = 2e-19 *->evtlekedkrgglGfsikggsdkgadkgifvsevlpGsgaAeagGrL +v +ek + g+Gfsi+gg + + + ++v ++ ++ g+A + Gr KIAA0705 1175 TVDMEK--GAKGFGFSIRGGREYK--MDLYVLRLAED-GPAIRNGRM 1216 qaGDqIlsvNGqdlenlsheeavlalkgsggsevtLtvl<-* ++GDqI+++NG+++++++h++a++++k+ g v+L+++ KIAA0705 1217 RVGDQIIEINGESTRDMTHARAIELIKSGGR-RVRLLLK 1254 //