hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/smart.HMMs.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-10423829/chunk_1/iprscan-20080502-10423829.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA0705 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- SM00228 436.4 1.5e-126 6 SM00072 181.6 7.6e-50 1 SM00456 91.1 1.3e-22 2 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- SM00228 1/6 68 143 .. 1 80 [] 45.5 6.9e-09 SM00072 1/1 149 333 .. 1 203 [] 181.6 7.6e-50 SM00456 1/2 345 377 .. 1 34 [] 54.7 1.2e-11 SM00456 2/2 391 423 .. 1 34 [] 36.4 3.9e-06 SM00228 2/6 476 552 .. 1 80 [] 79.3 4.7e-19 SM00228 3/6 655 725 .. 1 80 [] 64.0 1.9e-14 SM00228 4/6 814 890 .. 1 80 [] 79.1 5.5e-19 SM00228 5/6 957 1038 .. 1 80 [] 82.6 4.7e-20 SM00228 6/6 1183 1257 .. 1 80 [] 85.8 5.2e-21 Alignments of top-scoring domains: SM00228: domain 1 of 6, from 68 to 143: score 45.5, E = 6.9e-09 *->gglGfsivg......gifvssvvpGspAakaGrkslglLkvGDvIle g+lGf ++g+ ++++ + +v+pG +A+ +G +L +le KIAA0705 68 GQLGFELKGgaengqFPYLGEVKPGKVAYESGS----KLVSEELLLE 110 VNGetsvegltheeavdllkkaggggvGekvtLtvlRgg<-* VN t+v glt ++++++k +++ +++L+ +++g KIAA0705 111 VNE-TPVAGLTIRDVLAVIKHCKD-----PLRLKCVKQG 143 SM00072: domain 1 of 1, from 149 to 333: score 181.6, E = 7.6e-50 *->drRpivLsGpsGvGKstlkakLlqeyPdypkfgfsVshTTRppRpgE d+R++ ++++ +K++++++L+q ++d+ ++++V++TTRp+++gE KIAA0705 149 DLRHYLNLRF---QKGSVDHELQQIIRDN-LYLRTVPCTTRPHKEGE 191 vnGPvvDYhFvsLkeefeqdiksgkflEwgeysgnlyYGTskesvrqvae v+G vDY F++ +e+f++++ksg++lE+g+y++n yYGT+k++ +++ KIAA0705 192 VPG--VDYIFIT-VEDFMELEKSGALLESGTYEDN-YYGTPKPPAEPA-- 235 kGKhclLDidpqgvkqlkka.r.R.kselnpiviFIapPsleeleerlrg + ++D + g+ + +r+R+ks n+ I+pP+ ee+eer++ KIAA0705 236 PLLLNVTDQILPGATPSAEGkRkRnKSVSNMEKASIEPPE-EEEEERPV- 283 aeqRgteteeriqkrlaaaaqkeaqeyskeahlFdlvivnddledayYke +++ ++ + +++ +k+a+++ +++ + + ++++ +e KIAA0705 284 ---VNGNGVVVTPESSEH-EDKSAGAS----GEMPSQPYPAPVYSQP-EE 324 Lkeileaeq<-* Lke +++++ KIAA0705 325 LKEQMDDTK 333 SM00456: domain 1 of 2, from 345 to 377: score 54.7, E = 1.2e-11 *->plPpgWeerkdpdsGrpYYyNheTketqWekPre<-* plP++We++++++ G +Y+++h+Tk+t+W +Pr+ KIAA0705 345 PLPDNWEMAYTEK-GEVYFIDHNTKTTSWLDPRL 377 SM00456: domain 2 of 2, from 391 to 423: score 36.4, E = 3.9e-06 *->plPpgWeerkdpdsGrpYYyNheTketqWekPre<-* lP gWe++ dp +YY++h++++tq+e P++ KIAA0705 391 ELPYGWEKIDDPI-YGTYYVDHINRRTQFENPVL 423 SM00228: domain 2 of 6, from 476 to 552: score 79.3, E = 4.7e-19 *->gglGfsivg......gifvssvvpGspAakaGrkslglLkvGDvIle g+Gf+i g++++++ + v+sv+p++pAa++G+ + GDvI+ KIAA0705 476 MGFGFTIIGgdepdeFLQVKSVIPDGPAAQDGK-----METGDVIVY 517 VNGetsvegltheeavdllkkaggggvGekvtLtvlRgg<-* +N + v g th+++v+l ++ + G++v L+++Rg KIAA0705 518 INE-VCVLGHTHADVVKLFQSVPI---GQSVNLVLCRGY 552 SM00228: domain 3 of 6, from 655 to 725: score 64.0, E = 1.9e-14 *->gglGfsivg...gifvssvvpGspAakaGrkslglLkvGDvIleVNG +g+Gf+i+++++g v+++++ G L++GD I+e+N KIAA0705 655 QGFGFTIADsptGQRVKQILD--IQGCPG------LCEGDLIVEINQ 693 etsvegltheeavdllkkaggggvGekvtLtvlRgg<-* ++v++l+h e+vd+lk ++ G++ +L++ Rgg KIAA0705 694 -QNVQNLSHTEVVDILKDCPI---GSETSLIIHRGG 725 SM00228: domain 4 of 6, from 814 to 890: score 79.1, E = 5.5e-19 *->gglGfsivg......gifvssvvpGspAakaGrkslglLkvGDvIle g+Gf+i g+++++++i++ v++ + A+++Gr L++GD+++ KIAA0705 814 SGFGFRILGgdepgqPILIGAVIAMGSADRDGR-----LHPGDELVY 855 VNGetsvegltheeavdllkkaggggvGekvtLtvlRgg<-* V+G ++v g+th ++dl+ a ++g +v Ltv+R+ KIAA0705 856 VDG-IPVAGKTHRYVIDLMHHAARNG---QVNLTVRRKV 890 SM00228: domain 5 of 6, from 957 to 1038: score 82.6, E = 4.7e-20 *->gglGfsivg.............gifvssvvpGspAakaGrkslglLk +g+Gf i ++ ++++++++ + ++ + ++++GspA+++ + Lk KIAA0705 957 EGFGFVIISslnrpesgstitvPHKIGRIIDGSPADRCAK-----LK 998 vGDvIleVNGetsvegltheeavdllkkaggggvGekvtLtvlRgg<-* vGD+Il+VNG +s+ +++h+++v+l+k ag +vtL +++++ KIAA0705 999 VGDRILAVNG-QSIINMPHADIVKLIKDAGL-----SVTLRIIPQE 1038 SM00228: domain 6 of 6, from 1183 to 1257: score 85.8, E = 5.2e-21 *->gglGfsivg......gifvssvvpGspAakaGrkslglLkvGDvIle +g+Gfsi+g+++ + ++v ++ +++pA + Gr ++vGD+I+e KIAA0705 1183 KGFGFSIRGgreykmDLYVLRLAEDGPAIRNGR-----MRVGDQIIE 1224 VNGetsvegltheeavdllkkaggggvGekvtLtvlRgg<-* +NG +s++++th++a++l+k+ g+ +v+L+++Rg KIAA0705 1225 ING-ESTRDMTHARAIELIKSGGR-----RVRLLLKRGT 1257 //