hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-10460384/chunk_1/iprscan-20080502-10460384.nocrc
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Query sequence: KIAA0707
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF01852.10.fs START domain                                   212.8    1.5e-66   1
PF01852.10.ls START domain                                   214.7    1.9e-61   1
PF03061.12.fs Thioesterase superfamily                        76.0    1.5e-20   2
PF03061.12.ls Thioesterase superfamily                        73.4    6.6e-19   2

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF03061.12.ls   1/2      84   161 ..     1    77 []    23.4  0.00075
PF03061.12.fs   1/2      90   156 ..     7    72 ..    28.0  4.2e-07
PF03061.12.fs   2/2     257   334 ..     1    77 []    48.0    1e-12
PF03061.12.ls   2/2     257   334 ..     1    77 []    50.0  7.3e-12
PF01852.10.fs   1/1     407   613 ..     1   244 []   212.8  1.5e-66
PF01852.10.ls   1/1     407   613 ..     1   244 []   214.7  1.9e-61

Alignments of top-scoring domains:
PF03061.12.ls: domain 1 of 2, from 84 to 161: score 23.4, E = 0.00075
                   *->gGvvhGGvylalaDeargaaarslgg.qvvvvvelnidFlrParlGd
                       G +  G +l+++D+++ + a +++g  +v+++++ i F   + +G+
    KIAA0707    84    RGELSVGQLLKWIDTTACLSAERHAGcPCVTASMDDIYFEHTISVGQ 130  

                   vltvearvvrlGrtsavvevevrdedgrlva<-*
                   v+ ++a+v r+ ++s++v ++v +ed    +   
    KIAA0707   131 VVNIKAKVNRAFNSSMEVGIQVASEDLCSEK    161  

PF03061.12.fs: domain 1 of 2, from 90 to 156: score 28.0, E = 4.2e-07
                   *->GvylalaDeargaaarslgg.qvvvvvelnidFlrParlGdvltvea
                      G +l+++D+++ + a +++g  +v+++++ i F   + +G+v+ ++a
    KIAA0707    90    GQLLKWIDTTACLSAERHAGcPCVTASMDDIYFEHTISVGQVVNIKA 136  

                   rvvrlGrtsavvevevrded<-*
                   +v r+ ++s++v ++v +ed   
    KIAA0707   137 KVNRAFNSSMEVGIQVASED    156  

PF03061.12.fs: domain 2 of 2, from 257 to 334: score 48.0, E = 1e-12
                   *->gGvvhGGvylalaDeargaaarslgg.qvvvvvelnidFlrParlGd
                      +G+ +GG ++a+++ ++++aa++l++ +    +    +F+ P  +Gd
    KIAA0707   257    QGNTFGGQIMAWMENVATIAASRLCRaHPTLKAIEMFHFRGPSQVGD 303  

                   vltvearvvrlGrtsavvevevrdedgrlva<-*
                   +l+++a v ++ ++s++v v v +  ++  +   
    KIAA0707   304 RLVLKAIVNNAFKHSMEVGVCVEAYRQEAET    334  

PF03061.12.ls: domain 2 of 2, from 257 to 334: score 50.0, E = 7.3e-12
                   *->gGvvhGGvylalaDeargaaarslgg.qvvvvvelnidFlrParlGd
                      +G+ +GG ++a+++ ++++aa++l++ +    +    +F+ P  +Gd
    KIAA0707   257    QGNTFGGQIMAWMENVATIAASRLCRaHPTLKAIEMFHFRGPSQVGD 303  

                   vltvearvvrlGrtsavvevevrdedgrlva<-*
                   +l+++a v ++ ++s++v v v +  ++  +   
    KIAA0707   304 RLVLKAIVNNAFKHSMEVGVCVEAYRQEAET    334  

PF01852.10.fs: domain 1 of 1, from 407 to 613: score 212.8, E = 1.5e-66
                   *->elaeeaaqelvkmalsdepgWvkssetgrenengdevlqkfepsqvt
                      +++++++++  +++l+++++Wv+ss      e+++++l+++e++++ 
    KIAA0707   407    QVYLSYNNVSSLKMLVAKDNWVLSS------EISQVRLYTLEDDKF- 446  

                   kppGlkdsgeasRasgvVpmvlaFllveellddmeyraqWdkdvrciVsk
                           +++++++++V++++aFll+++l++++    +Wdk++r    +
    KIAA0707   447 -------LSFHMEMVVHVDAAQAFLLLSDLRQRP----EWDKHYR----S 481  

                   aetlevissgeGGnrngalqyyvaelqaltplsPtRDfvfvRywrqdDdH
                   +e+++++++++     +++++++++l    +++P +Dfv+++++r+++d 
    KIAA0707   482 VELVQQVDEDD-----AIYHVTSPALGG--HTKP-QDFVILASRRKPCD- 522  

                   RFlrdgvyvivdvSvdspqkppeGPpssgvvRaerlpSGyliepcgngpe
                      ++++yvi+++Sv+ p++++    +++++R+e+l+SG++++++g++ +
    KIAA0707   523 ---NGDPYVIALRSVTLPTHRE----TPEYRRGETLCSGFCLWREGDQLT 565  

                   kskvtwvehvDlkgwlP.vhwllrslvksgmafgaktwvatlqrlcek<-
                   k+++++v++++l ++++ ++w l+s+ k ++ +g++ ++a  ++++ k  
    KIAA0707   566 KCCWVRVSLTELVSASGfYSWGLESRSKGRRSDGWNGKLAGGHLSTLK   613  

                   *
                    
    KIAA0707     -   -    

PF01852.10.ls: domain 1 of 1, from 407 to 613: score 214.7, E = 1.9e-61
                   *->elaeeaaqelvkmalsdepgWvkssetgrenengdevlqkfepsqvt
                      +++++++++  +++l+++++Wv+ss      e+++++l+++e++++ 
    KIAA0707   407    QVYLSYNNVSSLKMLVAKDNWVLSS------EISQVRLYTLEDDKF- 446  

                   kppGlkdsgeasRasgvVpmvlaFllveellddmeyraqWdkdvrciVsk
                           +++++++++V++++aFll+++l++++    +Wdk++r    +
    KIAA0707   447 -------LSFHMEMVVHVDAAQAFLLLSDLRQRP----EWDKHYR----S 481  

                   aetlevissgeGGnrngalqyyvaelqaltplsPtRDfvfvRywrqdDdH
                   +e+++++++++     +++++++++l    +++P +Dfv+++++r+++d 
    KIAA0707   482 VELVQQVDEDD-----AIYHVTSPALGG--HTKP-QDFVILASRRKPCD- 522  

                   RFlrdgvyvivdvSvdspqkppeGPpssgvvRaerlpSGyliepcgngpe
                      ++++yvi+++Sv+ p++++    +++++R+e+l+SG++++++g++ +
    KIAA0707   523 ---NGDPYVIALRSVTLPTHRE----TPEYRRGETLCSGFCLWREGDQLT 565  

                   kskvtwvehvDlkgwlP.vhwllrslvksgmafgaktwvatlqrlcek<-
                   k+++++v++++l ++++ ++w l+s+ k ++ +g++ ++a  ++++ k  
    KIAA0707   566 KCCWVRVSLTELVSASGfYSWGLESRSKGRRSDGWNGKLAGGHLSTLK   613  

                   *
                    
    KIAA0707     -   -    

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