hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-10460384/chunk_1/iprscan-20080502-10460384.nocrc
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Query sequence: KIAA0707
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00234                                                 199.8    2.6e-55   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00234    1/1     407   613 ..     1   248 []   199.8  2.6e-55

Alignments of top-scoring domains:
SM00234: domain 1 of 1, from 407 to 613: score 199.8, E = 2.6e-55
                   *->evaeeaanellklaassekgWvlspetgeiengdevlsiledgqnpk
                      +v++ ++n + +++++ +++Wvls+     e+ +++l++led+++  
    KIAA0707   407    QVYLSYNNVSSLKMLVAKDNWVLSS-----EISQVRLYTLEDDKF-- 446  

                   qglkvsgealravgvvpmvcaedlvaellddgeyrkeWdknfagivskae
                         ++++++v++v++ +a++l+ +l++++    eWdk+++    ++e
    KIAA0707   447 -----LSFHMEMVVHVDAAQAFLLLSDLRQRP----EWDKHYR----SVE 483  

                   vvevissgtGgnrngviyhyvaksvapgpvsPtRDfvfvRywreddeHRa
                   +v+++++++     ++++++++++    +++P +Dfv++ ++r++++   
    KIAA0707   484 LVQQVDEDD-----AIYHVTSPALGG--HTKP-QDFVILASRRKPCD--- 522  

                   lvdgsyvivsvSvthetspptGpssgvvRaellpsgllieplgngpekdd
                    ++++yvi+++Svt +t+++   +++++R+e+l+sg++++++g++ +k  
    KIAA0707   523 -NGDPYVIALRSVTLPTHRE---TPEYRRGETLCSGFCLWREGDQLTK-- 566  

                   vkskvtwvsqaDlkGwlPvvhwllrsliksglaefaktRDsvatlqksce
                     +++++vs+++l   +++++w l+s+ k +++++++   ++a+ + s+ 
    KIAA0707   567 --CCWVRVSLTELVSASGFYSWGLESRSKGRRSDGWNG--KLAGGHLSTL 612  

                   k<-*
                   k   
    KIAA0707   613 K    613  

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