# /usr/local/bin/fasta34 -b50 -d10 -E0.01 -H -O./tmp/hj00237mrp1.fasta.huge -Q ../query/KIAA0710.ptfa ./tmplib.23663 2
FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 KIAA0710, 1206 aa
 vs ./tmplib.23663 library

1986299 residues in  2037 sequences
  Expectation_n fit: rho(ln(x))= 3.5705+/-0.00508; mu= 26.7635+/- 0.347
 mean_var=99.8379+/-23.951, 0's: 0 Z-trim: 1  B-trim: 7 in 1/39
 Lambda= 0.128359

FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 40, opt: 28, open/ext: -10/-2, width:  16
The best scores are:                                      opt bits E(2037)
KIAA1138  ( 1239 res)   hj05928                    (1239)  156 40.6  0.0019


>>KIAA1138  ( 1239 res)   hj05928                         (1239 aa)
 initn: 117 init1:  75 opt: 156  Z-score: 153.9  bits: 40.6 E(): 0.0019
Smith-Waterman score: 156;  32.812% identity (64.062% similar) in 128 aa overlap (1030-1150:1109-1226)

    1000      1010      1020      1030      1040      1050         
KIAA07 TKSTIKPSQMSVARITCVRGQGPNEGIPFIDDYISTQEQVVDYLTQYSGIKPGDL-DAKI
                                     : ... ....::: :..::.  .:: :...
KIAA11 YALDCEMSYTTYGLELTRVTVVDTDVHVVYDTFVKPDNEIVDYNTRFSGVTEADLADTSV
     1080      1090      1100      1110      1120      1130        

     1060      1070      1080      1090      1100      1110        
KIAA07 SSKHLTTLKSTYLKLRFLIDIGVKFVGHGLQKDFRVINLMVPKDQVLDTVYLF-H---MP
       .   :  .... :.. :  :  . ..::.:..:.  . : : .. :.::  :: :   .:
KIAA11 T---LRDVQAVLLSM-FSAD--TILIGHSLESDL--LALKVIHSTVVDTSVLFPHRLGLP
        1140      1150         1160        1170      1180      1190

         1120      1130        1140      1150      1160      1170  
KIAA07 RKRMISLRFLAWYFLDLKIQGET--HDSIEDARTALQLYRKYLELSKNGTEPESFHKVLK
        ::  ::: :   .:   :: ..  :.: ::: . ..:                      
KIAA11 YKR--SLRNLMADYLRQIIQDNVDGHSSSEDAGACMHLVIWKVREDAKTKR         
               1200      1210      1220      1230                  

           1180      1190      1200      
KIAA07 GLYEKGRKMDWKVPEPEGQTSPKNAAVFSSVLAL




1206 residues in 1 query   sequences
1986299 residues in 2037 library sequences
 Scomplib [34.26]
 start: Thu Dec 18 15:13:00 2008 done: Thu Dec 18 15:13:00 2008
 Total Scan time:  0.760 Total Display time:  0.040

Function used was FASTA [version 34.26.5 April 26, 2007]