hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-10511197/chunk_1/iprscan-20080502-10511197.nocrc
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Query sequence: KIAA0710
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model      Description                                  Score    E-value  N 
--------   -----------                                  -----    ------- ---
PF00929.14.fs Exonuclease                                   89.9    5.3e-27   1
PF00929.14.ls Exonuclease                                   91.8    1.9e-24   1
PF00443.19.fs Ubiquitin carboxyl-terminal hydrolase         22.0    2.4e-07   3

Parsed for domains:
Model      Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------   ------- ----- -----    ----- -----      -----  -------
PF00929.14.fs   1/1     978  1151 ..     1   187 []    89.9  5.3e-27
PF00929.14.ls   1/1     978  1151 ..     1   187 []    91.8  1.9e-24

Alignments of top-scoring domains:
PF00929.14.fs: domain 1 of 1, from 978 to 1151: score 89.9, E = 5.3e-27
                   *->lvviDcEtTGldpkga.v.s.g.kstekdeiiEiaavsivngen...
                      lv +D E++ l+ ++a+ +s+g+kst+k     +a++++v+g+ +++
    KIAA0710   978    LVGLDAEFVTLNEEEAeLrSdGtKSTIKPSQMSVARITCVRGQGpne 1024 

                   igevfdtyvkPerppkitdeatkftGItqemldnapsfeevleefleflk
                   +++ +d+y+   +   ++d++t+++GI + +ld + s +  l+++++ + 
    KIAA0710  1025 GIPFIDDYISTQEQ--VVDYLTQYSGIKPGDLDAKISSK-HLTTLKSTYL 1071 

                   klsilvahnnkkasfdvgfllyddlrflklphpfsnikindvidtlilak
                   kl  l+  +      +vg++l++d+r+++l +p      ++v+dt+ l++
    KIAA0710  1072 KLRFLIDIG----VKFVGHGLQKDFRVINLMVP-----KDQVLDTVYLFH 1112 

                   kafkgfkrgraktsLdaLaeklglefiqreniaHrAldDArataelf<-*
                   +   ++kr +   sL++La++++  +iq e   H++++DAr++++l+   
    KIAA0710  1113 M---PRKRMI---SLRFLAWYFLDLKIQGE--THDSIEDARTALQLY    1151 

PF00929.14.ls: domain 1 of 1, from 978 to 1151: score 91.8, E = 1.9e-24
                   *->lvviDcEtTGldpkga.v.s.g.kstekdeiiEiaavsivngen...
                      lv +D E++ l+ ++a+ +s+g+kst+k     +a++++v+g+ +++
    KIAA0710   978    LVGLDAEFVTLNEEEAeLrSdGtKSTIKPSQMSVARITCVRGQGpne 1024 

                   igevfdtyvkPerppkitdeatkftGItqemldnapsfeevleefleflk
                   +++ +d+y+   +   ++d++t+++GI + +ld + s +  l+++++ + 
    KIAA0710  1025 GIPFIDDYISTQEQ--VVDYLTQYSGIKPGDLDAKISSK-HLTTLKSTYL 1071 

                   klsilvahnnkkasfdvgfllyddlrflklphpfsnikindvidtlilak
                   kl  l+  +      +vg++l++d+r+++l +p      ++v+dt+ l++
    KIAA0710  1072 KLRFLIDIG----VKFVGHGLQKDFRVINLMVP-----KDQVLDTVYLFH 1112 

                   kafkgfkrgraktsLdaLaeklglefiqreniaHrAldDArataelf<-*
                   +   ++kr +   sL++La++++  +iq e   H++++DAr++++l+   
    KIAA0710  1113 M---PRKRMI---SLRFLAWYFLDLKIQGE--THDSIEDARTALQLY    1151 

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