hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-10525983/chunk_1/iprscan-20080502-10525983.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA0711 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF01344.15.fs Kelch motif 111.3 8.3e-31 5 PF01344.15.ls Kelch motif 112.9 8.4e-31 3 PF00651.21.fs BTB/POZ domain 47.4 9.6e-13 1 PF00651.21.ls BTB/POZ domain 49.1 1.4e-11 1 PF07646.5.ls Kelch motif 47.1 5.4e-11 3 PF07646.5.fs Kelch motif 42.9 8.5e-11 4 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00651.21.fs 1/1 171 269 .. 1 135 [] 47.4 9.6e-13 PF00651.21.ls 1/1 171 269 .. 1 135 [] 49.1 1.4e-11 PF01344.15.ls 1/3 386 437 .. 1 45 [] 46.2 1.1e-10 PF01344.15.fs 2/5 386 437 .. 1 45 [] 44.2 1e-11 PF07646.5.fs 3/4 439 480 .. 1 54 [] 18.5 0.00036 PF01344.15.ls 2/3 439 480 .. 1 45 [] 41.8 2.2e-09 PF01344.15.fs 3/5 439 480 .. 1 45 [] 39.8 1.7e-10 PF07646.5.ls 2/3 439 480 .. 1 54 [] 20.3 0.0065 PF01344.15.ls 3/3 484 525 .. 1 45 [] 25.0 0.00025 PF01344.15.fs 4/5 484 525 .. 1 45 [] 23.1 1e-05 PF07646.5.ls 3/3 484 525 .. 1 54 [] 15.4 0.19 Alignments of top-scoring domains: PF00651.21.fs: domain 1 of 1, from 171 to 269: score 47.4, E = 9.6e-13 *->lnelrkqgelcDVtLvvgdgsgrydvgkkfkAHKavLaacSpYFkal + + + + D +L v g++++AHKavLaa+S+YF+a KIAA0711 171 FGAVYGEP---DLVLEVS--------GRRLRAHKAVLAARSDYFRAR 206 FtgqfkesiteeessvsseieledvspedfealLefiYtgelsitqdqks + + ++ ++vs +++++lL +Y+g+ KIAA0711 207 ASRD--------------VLRVQGVSLTALRLLLADAYSGRMAGV----- 237 PssckseenvedlLaaAadllqipslvdaCeefliksl<-* +++nv+++ a A ++lq+p+ + ++ +l KIAA0711 238 -----RPDNVAEVVAGA-RRLQLPGAAQRATDAVGPQL 269 PF00651.21.ls: domain 1 of 1, from 171 to 269: score 49.1, E = 1.4e-11 *->lnelrkqgelcDVtLvvgdgsgrydvgkkfkAHKavLaacSpYFkal + + + + D +L v g++++AHKavLaa+S+YF+a KIAA0711 171 FGAVYGEP---DLVLEVS--------GRRLRAHKAVLAARSDYFRAR 206 FtgqfkesiteeessvsseieledvspedfealLefiYtgelsitqdqks + + ++ ++vs +++++lL +Y+g+ KIAA0711 207 ASRD--------------VLRVQGVSLTALRLLLADAYSGRMAGV----- 237 PssckseenvedlLaaAadllqipslvdaCeefliksl<-* +++nv+++ a A ++lq+p+ + ++ +l KIAA0711 238 -----RPDNVAEVVAGA-RRLQLPGAAQRATDAVGPQL 269 PF01344.15.ls: domain 1 of 3, from 386 to 437: score 46.2, E = 1.1e-10 *->pRsgagvvvldgkiYviGGydg.......qslnsvevYDpetntWtk p +g+g +vl ++++v+GG+ + +++++ ++++ v++Y+p t++W+ KIAA0711 386 PARGCGLCVLYNYLFVAGGVAPagpdgraRPSDQVFCYNPATDSWSA 432 lpsmp<-* + +++ KIAA0711 433 VRPLR 437 PF01344.15.fs: domain 2 of 5, from 386 to 437: score 44.2, E = 1e-11 *->pRsgagvvvldgkiYviGGydg.......qslnsvevYDpetntWtk p +g+g +vl ++++v+GG+ + +++++ ++++ v++Y+p t++W+ KIAA0711 386 PARGCGLCVLYNYLFVAGGVAPagpdgraRPSDQVFCYNPATDSWSA 432 lpsmp<-* + +++ KIAA0711 433 VRPLR 437 PF07646.5.fs: domain 3 of 4, from 439 to 480: score 18.5, E = 0.00036 *->pryphasvvpggklyvvGGsfkgnrgtgngdesssdllvldpetnvW r++ + ++g ly vGG ++++ ++dp+ +W KIAA0711 439 ARSQLRLLALDGHLYAVGGE------------CLLSVERYDPRADRW 473 eklpalp<-* ++++lp KIAA0711 474 APVAPLP 480 PF01344.15.ls: domain 2 of 3, from 439 to 480: score 41.8, E = 2.2e-09 *->pRsgagvvvldgkiYviGGydgqslnsvevYDpetntWtklpsmp<- +Rs +ldg++Y++GG + l sve+YDp+ ++W +++++p KIAA0711 439 ARSQLRLLALDGHLYAVGGEC---LLSVERYDPRADRWAPVAPLP 480 * KIAA0711 - - PF01344.15.fs: domain 3 of 5, from 439 to 480: score 39.8, E = 1.7e-10 *->pRsgagvvvldgkiYviGGydgqslnsvevYDpetntWtklpsmp<- +Rs +ldg++Y++GG + l sve+YDp+ ++W +++++p KIAA0711 439 ARSQLRLLALDGHLYAVGGEC---LLSVERYDPRADRWAPVAPLP 480 * KIAA0711 - - PF07646.5.ls: domain 2 of 3, from 439 to 480: score 20.3, E = 0.0065 *->pryphasvvpggklyvvGGsfkgnrgtgngdesssdllvldpetnvW r++ + ++g ly vGG ++++ ++dp+ +W KIAA0711 439 ARSQLRLLALDGHLYAVGGE------------CLLSVERYDPRADRW 473 eklpalp<-* ++++lp KIAA0711 474 APVAPLP 480 PF01344.15.ls: domain 3 of 3, from 484 to 525: score 25.0, E = 0.00025 *->pRsgagvvvldgkiYviGGydgqslnsvevYDpetntWtklpsmp<- + + +++++g+iYv GG+ + +YDp+ ++W+++p + KIAA0711 484 FAVAHEATTCHGEIYVSGGSL---FYRLLKYDPRRDEWQECPCSS 525 * KIAA0711 - - PF01344.15.fs: domain 4 of 5, from 484 to 525: score 23.1, E = 1e-05 *->pRsgagvvvldgkiYviGGydgqslnsvevYDpetntWtklpsmp<- + + +++++g+iYv GG+ + +YDp+ ++W+++p + KIAA0711 484 FAVAHEATTCHGEIYVSGGSL---FYRLLKYDPRRDEWQECPCSS 525 * KIAA0711 - - PF07646.5.ls: domain 3 of 3, from 484 to 525: score 15.4, E = 0.19 *->pryphasvvpggklyvvGGsfkgnrgtgngdesssdllvldpetnvW + + h ++++ g +yv+GGs ++ +ll +dp+ +W KIAA0711 484 FAVAHEATTCHGEIYVSGGS------------LFYRLLKYDPRRDEW 518 eklpalp<-* ++p+ KIAA0711 519 QECPCSS 525 //