hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-10525983/chunk_1/iprscan-20080502-10525983.nocrc
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Query sequence: KIAA0711
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model      Description                                  Score    E-value  N 
--------   -----------                                  -----    ------- ---
SM00612                                                  75.3    7.6e-18   3
SM00225                                                  62.5    5.5e-14   1

Parsed for domains:
Model      Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------   ------- ----- -----    ----- -----      -----  -------
SM00225      1/1     178   269 ..     1   114 []    62.5  5.5e-14
SM00612      1/3     398   450 ..     1    55 []    29.6  0.00043
SM00612      2/3     451   495 ..     1    55 []    27.0   0.0026
SM00612      3/3     496   538 ..     1    55 []    18.7     0.16

Alignments of top-scoring domains:
SM00225: domain 1 of 1, from 178 to 269: score 62.5, E = 5.5e-14
                   *->cDvtlvvggdlggdnaegkkfhasqHkavLaacrrdSpyFkalfes.
                       D++l v+g         ++++a  HkavLaa+   S+yF+a+ + +
    KIAA0711   178    PDLVLEVSG---------RRLRA--HKAVLAAR---SDYFRARASRd 210  

                   .ieldDeallievspeaFralLnflYt..kldlpeedvenveelLelAdf
                      +++      vs +a+r+lL   Y+++   + ++   nv e+ + A++
    KIAA0711   211 vLRVQG------VSLTALRLLLADAYSgrMAGVRPD---NVAEVVAGARR 251  

                   ldSYGqip.lvelCeefllknl<-*
                   l    q+p+ ++  +++   +l   
    KIAA0711   252 L----QLPgAAQRATDAVGPQL    269  

SM00612: domain 1 of 3, from 398 to 450: score 29.6, E = 0.00043
                   *->kiYvvGGfdgttrclp.gegqrlksvEvYDpetnkWrpvpsMptpRs
                       ++v+GG  +     p+g ++ ++ v++Y+p t+ W+ v +++++Rs
    KIAA0711   398    YLFVAGGVAP---AGPdGRARPSDQVFCYNPATDSWSAVRPLRQARS 441  

                   gagvaving<-*
                      + +++g   
    KIAA0711   442 QLRLLALDG    450  

SM00612: domain 2 of 3, from 451 to 495: score 27.0, E = 0.0026
                   *->kiYvvGGfdgttrclpgegqrlksvEvYDpetnkWrpvpsMptpRsg
                      ++Y+vGG            ++l svE+YDp+ + W pv+++p++ + 
    KIAA0711   451    HLYAVGG------------ECLLSVERYDPRADRWAPVAPLPRGAFA 485  

                   ag..vaving<-*
                   +++++++++g   
    KIAA0711   486 VAheATTCHG    495  

SM00612: domain 3 of 3, from 496 to 538: score 18.7, E = 0.16
                   *->kiYvvGGfdgttrclpgegqrlksvEvYDpetnkWrpvpsMptpRsg
                       iYv GG  +                +YDp++++W+++p  +++   
    KIAA0711   496    EIYVSGGSLF------------YRLLKYDPRRDEWQECPCSSSRERS 530  

                   agvaving<-*
                   a +++++g   
    KIAA0711   531 ADMVALDG    538  

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