hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-10563455/chunk_1/iprscan-20080502-10563455.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA0713 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF02194.6.ls PXA domain 383.4 3.2e-112 1 PF02194.6.fs PXA domain 381.5 1.2e-111 1 PF00787.14.fs PX domain 107.5 2.7e-32 1 PF00787.14.ls PX domain 109.3 1e-29 1 PF08628.2.fs Sorting nexin C terminal 107.1 3.3e-29 1 PF08628.2.ls Sorting nexin C terminal 68.1 2.7e-17 1 PF00615.9.fs Regulator of G protein signaling domain 34.1 1e-08 1 PF00615.9.ls Regulator of G protein signaling domain 24.2 2.1e-06 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF02194.6.ls 1/1 154 341 .. 1 204 [] 383.4 3.2e-112 PF02194.6.fs 1/1 154 341 .. 1 204 [] 381.5 1.2e-111 PF00615.9.ls 1/1 430 570 .. 1 143 [] 24.2 2.1e-06 PF00615.9.fs 1/1 497 553 .. 61 128 .. 34.1 1e-08 PF00787.14.fs 1/1 631 744 .. 1 131 [] 107.5 2.7e-32 PF00787.14.ls 1/1 631 744 .. 1 131 [] 109.3 1e-29 PF08628.2.fs 1/1 860 943 .. 1 100 [. 107.1 3.3e-29 PF08628.2.ls 1/1 860 943 .. 1 128 [] 68.1 2.7e-17 Alignments of top-scoring domains: PF02194.6.ls: domain 1 of 1, from 154 to 341: score 383.4, E = 3.2e-112 *->eaqLekeLnsiIskilrdYVqsWYkKisvSeDasFlkeieqtlksil +++++++L+++I+++lrdYVq+WY+ ++S+D+sFl+ei+qtl+++l KIAA0713 154 ANIIDEPLQQVIQFSLRDYVQYWYY--TLSDDESFLLEIRQTLQNAL 198 lelkkrlskqDsaslivlklyeilkklistiedakEAvlrkaspqekite +++++r++++D+++++ +++i+++++++++ v+rka q+kite KIAA0713 199 IQFATRSKEIDWQPYF---TTRIVDDFGTHLR-----VFRKA--QQKITE 238 idlqyketaedNYKphkaLekkenEltKEvCRDLvCtsPKDEEkylRklv +d+q+k+taed ++++++++e+E++KEvCRDLvCtsPKDEE++lR+l+ KIAA0713 239 KDDQVKGTAED---LVDTFFEVEVEMEKEVCRDLVCTSPKDEEGFLRDLC 285 elLLkfLlPedelesklvGrvllrEvLAtvvilplIsklSdPdfinlvii e+LL++LlP++++++k++ r+++rE+LA++++lplI++lSdPd+in+++i KIAA0713 286 EVLLYLLLPPGDFQNKIM-RYFVREILARGILLPLINQLSDPDYINQYVI 334 llfskse<-* +++++s+ KIAA0713 335 WMIRDSN 341 PF02194.6.fs: domain 1 of 1, from 154 to 341: score 381.5, E = 1.2e-111 *->eaqLekeLnsiIskilrdYVqsWYkKisvSeDasFlkeieqtlksil +++++++L+++I+++lrdYVq+WY+ ++S+D+sFl+ei+qtl+++l KIAA0713 154 ANIIDEPLQQVIQFSLRDYVQYWYY--TLSDDESFLLEIRQTLQNAL 198 lelkkrlskqDsaslivlklyeilkklistiedakEAvlrkaspqekite +++++r++++D+++++ +++i+++++++++ v+rka q+kite KIAA0713 199 IQFATRSKEIDWQPYF---TTRIVDDFGTHLR-----VFRKA--QQKITE 238 idlqyketaedNYKphkaLekkenEltKEvCRDLvCtsPKDEEkylRklv +d+q+k+taed ++++++++e+E++KEvCRDLvCtsPKDEE++lR+l+ KIAA0713 239 KDDQVKGTAED---LVDTFFEVEVEMEKEVCRDLVCTSPKDEEGFLRDLC 285 elLLkfLlPedelesklvGrvllrEvLAtvvilplIsklSdPdfinlvii e+LL++LlP++++++k++ r+++rE+LA++++lplI++lSdPd+in+++i KIAA0713 286 EVLLYLLLPPGDFQNKIM-RYFVREILARGILLPLINQLSDPDYINQYVI 334 llfskse<-* +++++s+ KIAA0713 335 WMIRDSN 341 PF00615.9.ls: domain 1 of 1, from 430 to 570: score 24.2, E = 2.1e-06 *->sfeklldkqpiGrllFreFLktefsepkenieFwlaveEyektespa ++++l + + + F ++ + + + ++ Fw ve y++t + KIAA0713 430 PLDSIL-VDNVALQFFMDYMQQTGGQ--AHLFFWMTVEGYRVTAQQ- 472 ekrpdkaredev...........lAaAyGIydeFispeapkfevnldsev + +r+++ +++++++++ AaA GIy+ ++s++a v +d+++ KIAA0713 473 QLEVLLSRQRDGkhqtnqtkgllRAAAVGIYEQYLSEKASP-RVTVDDYL 521 vestqqnlkeavevddllkdlqptkdlFeeaqreiytlmrgD..sfprFL v++ +++l + pt+++F++ qr++y+lm +D++ +p F KIAA0713 522 VAKLADTLNHE----------DPTPEIFDDIQRKVYELMLRDerFYPSFR 561 eSdyflrfL<-* + r L KIAA0713 562 QNALYVRML 570 PF00615.9.fs: domain 1 of 1, from 497 to 553: score 34.1, E = 1e-08 *->AaAyGIydeFispeapkfevnldsevvestqqnlkeavevddllkdl AaA GIy+ ++s++a v +d+++v++ +++l + KIAA0713 497 AAAVGIYEQYLSEKASP-RVTVDDYLVAKLADTLNHE---------- 532 qptkdlFeeaqreiytlmrgD<-* pt+++F++ qr++y+lm +D KIAA0713 533 DPTPEIFDDIQRKVYELMLRD 553 PF00787.14.fs: domain 1 of 1, from 631 to 744: score 107.5, E = 2.7e-32 *->dpilivvvvdpetsrkkegdkkhtyyvyevttktn...kewsVkRRY dp +++ v++++ +k ++ y+++v++++ +++++w+++RRY KIAA0713 631 DPYAVAGVCNDH-------GKTYALYAITVHRRNLnseEMWKTYRRY 670 sdFeeLhekLlrkfp.grilPplPpKklfgryrkeslpmtsvwhssnnfd sdF+++h++++++f +++ + +lP+Kk+f nn+d KIAA0713 671 SDFHDFHMRITEQFEsLSSILKLPEKKTF-----------------NNMD 703 eefiekRrkgLeeyLqrllqhPelsn....esevvleFLesd<-* ++f+ekR+k+L++yLq ll Pe+++ ++ + v++FLe KIAA0713 704 RDFLEKRKKDLNAYLQ-LLLAPEMMKaspaLAHYVYDFLENK 744 PF00787.14.ls: domain 1 of 1, from 631 to 744: score 109.3, E = 1e-29 *->dpilivvvvdpetsrkkegdkkhtyyvyevttktn...kewsVkRRY dp +++ v++++ +k ++ y+++v++++ +++++w+++RRY KIAA0713 631 DPYAVAGVCNDH-------GKTYALYAITVHRRNLnseEMWKTYRRY 670 sdFeeLhekLlrkfp.grilPplPpKklfgryrkeslpmtsvwhssnnfd sdF+++h++++++f +++ + +lP+Kk+f nn+d KIAA0713 671 SDFHDFHMRITEQFEsLSSILKLPEKKTF-----------------NNMD 703 eefiekRrkgLeeyLqrllqhPelsn....esevvleFLesd<-* ++f+ekR+k+L++yLq ll Pe+++ ++ + v++FLe KIAA0713 704 RDFLEKRKKDLNAYLQ-LLLAPEMMKaspaLAHYVYDFLENK 744 PF08628.2.fs: domain 1 of 1, from 860 to 943: score 107.1, E = 3.3e-29 *->WLRGRalivvlqsllkqtlGPSLsTIekkirdsvedrltseerlvsy WLR R++ ++lq+l++ t+G +TI++ki+d+v+ + ts+e++++ KIAA0713 860 WLR-RNIKNLLQQLIRATYG---DTINRKIVDHVD-WMTSPEQVADS 901 lsllrdslWcedlfPgGeeLasppppqeRseeekertrkaAkivqlLilr ++ +rd++W P+G La++ p R+++ ++rtr a k ++L l KIAA0713 902 VKRFRDAFW-----PNG-ILAEAVP--CRDKSIRMRTRVAGK--TKL-LA 940 llP<-* +P KIAA0713 941 IMP 943 PF08628.2.ls: domain 1 of 1, from 860 to 943: score 68.1, E = 2.7e-17 *->WLRGRalivvlqsllkqtlGPSLsTIekkirdsvedrltseerlvsy WLR R++ ++lq+l++ t+G +TI++ki+d+v+ + ts+e++++ KIAA0713 860 WLR-RNIKNLLQQLIRATYG---DTINRKIVDHVD-WMTSPEQVADS 901 lsllrdslWcedlfPgGeeLasppppqeRseeekertrkaAkivqlLilr ++ +rd++W P+G La++ p R+++ ++rtr a k ++L l KIAA0713 902 VKRFRDAFW-----PNG-ILAEAVP--CRDKSIRMRTRVAGK--TKL-LA 940 llPdalgkvvGrenareairriFdmLQnprL<-* +P KIAA0713 941 IMP---------------------------- 943 //