# /usr/local/bin/fasta34 -b50 -d10 -E0.01 -H -O./tmp/hk01141.fasta.huge -Q ../query/KIAA0719.ptfa ./tmplib.23663 2
FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 KIAA0719, 624 aa
 vs ./tmplib.23663 library

1986881 residues in  2037 sequences
  Expectation_n fit: rho(ln(x))= 5.9697+/-0.00635; mu= 11.1539+/- 0.432
 mean_var=146.1895+/-34.372, 0's: 0 Z-trim: 4  B-trim: 0 in 0/40
 Lambda= 0.106076

FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 38, opt: 26, open/ext: -10/-2, width:  16
The best scores are:                                      opt bits E(2037)
KIAA1037  ( 488 res)   fh02134                     ( 488)  197 41.8 0.00016


>>KIAA1037  ( 488 res)   fh02134                          (488 aa)
 initn: 119 init1:  93 opt: 197  Z-score: 173.1  bits: 41.8 E(): 0.00016
Smith-Waterman score: 204;  28.704% identity (55.556% similar) in 216 aa overlap (88-295:222-414)

        60        70        80        90        100       110      
KIAA07 ALAVGAPLLLGAGAIYLWSRQQRRREARGRGDASGLKRNSER-KTPEGRASPAPGSGHPE
                                     : ..::. .:.  . ::.:.  .:    : 
KIAA10 QRPYTFLLPRKCHSSGEVQNGKMSTNGVSNGVSNGLHLHSNGFRLPESRGHVSPQVELP-
             200       210       220       230       240       250 

        120       130       140       150       160       170      
KIAA07 GPGAHLDMNSLDRAQAAKNKGNKYFKAGKYEQAIQCYTEAISLCPTEKNVDLSTFYQNRA
        :        :.:   .:...:. :   .. :::: :..:..  : .     . .: :::
KIAA10 -P-------YLER---VKQQANEAFACQQWTQAIQLYSKAVQRAPHN-----AMLYGNRA
                         260       270       280            290    

        180           190       200       210          220         
KIAA07 AAFEQLQKWK----EVAQDCTKAVELNPKYVKALFRRAKAHEKLD---NKKECLEDVTAV
       ::. . .::     .. .:: ::. ::: ..:: :: :.   .:    .  :::.:  . 
KIAA10 AAYMK-RKWDGDHYDALRDCLKAISLNPCHLKAHFRLARCLFELKYVAEALECLDDFKGK
           300       310       320       330       340       350   

     230       240       250       260       270       280         
KIAA07 CILEGFQNQQSMLLADKVLKLLGKEKAKEKYKNREPLMPSPQFIKSYFSSFTDDIISQPM
          .. ..  . :  : .  :..:. ..::   . :   .:  ..:  .:  :.:  . :
KIAA10 FPEQAHSSACDALGRDITAALFSKNDGEEK---KGPGGGAPVRLRS--TSRKDSISEDEM
           360       370       380          390         400        

     290       300       310       320       330       340         
KIAA07 LKGEKSDEDKDKEGEALEVKENSGYLKAKQYMEEENYDKIISECSKEIDAEGKYMAEALL
       .  :.:                                                      
KIAA10 VLRERSYDYQFRYCGHCNTTTDIKEANFFGRSEALKRRVQPSWQREVEWGVLGHNGFREE
      410       420       430       440       450       460        




624 residues in 1 query   sequences
1986881 residues in 2037 library sequences
 Scomplib [34.26]
 start: Thu Dec 18 15:13:22 2008 done: Thu Dec 18 15:13:22 2008
 Total Scan time:  0.510 Total Display time:  0.010

Function used was FASTA [version 34.26.5 April 26, 2007]