hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-11065377/chunk_1/iprscan-20080502-11065377.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA0719 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00515.18.ls Tetratricopeptide repeat 182.1 1.3e-51 9 PF00515.18.fs Tetratricopeptide repeat 168.4 1.7e-47 9 PF07719.7.ls Tetratricopeptide repeat 159.0 1.1e-44 8 PF07719.7.fs Tetratricopeptide repeat 144.0 3.8e-40 8 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF07719.7.fs 1/8 130 163 .. 1 34 [] 32.5 4.6e-08 PF00515.18.fs 1/9 130 163 .. 1 34 [] 41.9 6.3e-11 PF07719.7.ls 1/8 130 163 .. 1 34 [] 34.5 3.5e-07 PF00515.18.ls 1/9 130 163 .. 1 34 [] 43.9 4.9e-10 PF00515.18.fs 2/9 169 202 .. 1 34 [] 26.7 1.3e-06 PF00515.18.ls 2/9 169 202 .. 1 34 [] 28.7 1.9e-05 PF07719.7.ls 2/8 169 202 .. 1 34 [] 20.2 0.0069 PF00515.18.fs 3/9 203 225 .. 1 23 [. 10.3 0.061 PF00515.18.ls 3/9 203 236 .. 1 34 [] 8.0 0.55 PF00515.18.fs 4/9 345 378 .. 1 34 [] 14.4 0.0042 PF00515.18.ls 4/9 345 378 .. 1 34 [] 16.4 0.054 PF00515.18.ls 5/9 383 416 .. 1 34 [] 21.0 0.0038 PF00515.18.fs 5/9 383 416 .. 1 34 [] 19.0 0.00021 PF00515.18.fs 6/9 417 450 .. 1 34 [] 24.5 5.6e-06 PF00515.18.ls 6/9 417 450 .. 1 34 [] 26.5 8.6e-05 PF07719.7.ls 6/8 417 450 .. 1 34 [] 24.5 0.00035 PF07719.7.ls 7/8 492 525 .. 1 34 [] 25.2 0.00022 PF00515.18.fs 7/9 492 525 .. 1 34 [] 16.6 0.001 PF00515.18.ls 7/9 492 525 .. 1 34 [] 18.6 0.021 PF00515.18.fs 9/9 561 594 .. 1 34 [] 14.6 0.0038 PF00515.18.ls 9/9 561 594 .. 1 34 [] 16.6 0.052 Alignments of top-scoring domains: PF07719.7.fs: domain 1 of 8, from 130 to 163: score 32.5, E = 4.6e-08 *->aealynlGlayyklgdyeeAleayekAleldPnn<-* a a n G+ y+k+g+ye+A+++y +A++l P+ KIAA0719 130 AQAAKNKGNKYFKAGKYEQAIQCYTEAISLCPTE 163 PF00515.18.fs: domain 1 of 9, from 130 to 163: score 41.9, E = 6.3e-11 *->aeayynlGnaylklgkydeAieayekALeldPnn<-* a+a +n+Gn y+k gky++Ai++y++A++l P+ KIAA0719 130 AQAAKNKGNKYFKAGKYEQAIQCYTEAISLCPTE 163 PF07719.7.ls: domain 1 of 8, from 130 to 163: score 34.5, E = 3.5e-07 *->aealynlGlayyklgdyeeAleayekAleldPnn<-* a a n G+ y+k+g+ye+A+++y +A++l P+ KIAA0719 130 AQAAKNKGNKYFKAGKYEQAIQCYTEAISLCPTE 163 PF00515.18.ls: domain 1 of 9, from 130 to 163: score 43.9, E = 4.9e-10 *->aeayynlGnaylklgkydeAieayekALeldPnn<-* a+a +n+Gn y+k gky++Ai++y++A++l P+ KIAA0719 130 AQAAKNKGNKYFKAGKYEQAIQCYTEAISLCPTE 163 PF00515.18.fs: domain 2 of 9, from 169 to 202: score 26.7, E = 1.3e-06 *->aeayynlGnaylklgkydeAieayekALeldPnn<-* + y n+++a+++l+k++e ++++kA+el+P++ KIAA0719 169 STFYQNRAAAFEQLQKWKEVAQDCTKAVELNPKY 202 PF00515.18.ls: domain 2 of 9, from 169 to 202: score 28.7, E = 1.9e-05 *->aeayynlGnaylklgkydeAieayekALeldPnn<-* + y n+++a+++l+k++e ++++kA+el+P++ KIAA0719 169 STFYQNRAAAFEQLQKWKEVAQDCTKAVELNPKY 202 PF07719.7.ls: domain 2 of 8, from 169 to 202: score 20.2, E = 0.0069 *->aealynlGlayyklgdyeeAleayekAleldPnn<-* ++ n++ a ++l++++e ++++ kA+el+P++ KIAA0719 169 STFYQNRAAAFEQLQKWKEVAQDCTKAVELNPKY 202 PF00515.18.fs: domain 3 of 9, from 203 to 225: score 10.3, E = 0.061 *->aeayynlGnaylklgkydeAiea<-* ++a+++++ a++kl + +e +e+ KIAA0719 203 VKALFRRAKAHEKLDNKKECLED 225 PF00515.18.ls: domain 3 of 9, from 203 to 236: score 8.0, E = 0.55 *->aeayynlGnaylklgkydeAieayekALeldPnn<-* ++a+++++ a++kl + +e +e+ + + l+ KIAA0719 203 VKALFRRAKAHEKLDNKKECLEDVTAVCILEGFQ 236 PF00515.18.fs: domain 4 of 9, from 345 to 378: score 14.4, E = 0.0042 *->aeayynlGnaylklgkydeAieayekALeldPnn<-* aea+ ++ yl g+ ++A +++k+++l + n KIAA0719 345 AEALLLRATFYLLIGNANAAKPDLDKVISLKEAN 378 PF00515.18.ls: domain 4 of 9, from 345 to 378: score 16.4, E = 0.054 *->aeayynlGnaylklgkydeAieayekALeldPnn<-* aea+ ++ yl g+ ++A +++k+++l + n KIAA0719 345 AEALLLRATFYLLIGNANAAKPDLDKVISLKEAN 378 PF00515.18.ls: domain 5 of 9, from 383 to 416: score 21.0, E = 0.0038 *->aeayynlGnaylklgkydeAieayekALeldPnn<-* a+a+ +G y++++++ ++++ A ++dP+n KIAA0719 383 ANALIKRGSMYMQQQQPLLSTQDFNMAADIDPQN 416 PF00515.18.fs: domain 5 of 9, from 383 to 416: score 19.0, E = 0.00021 *->aeayynlGnaylklgkydeAieayekALeldPnn<-* a+a+ +G y++++++ ++++ A ++dP+n KIAA0719 383 ANALIKRGSMYMQQQQPLLSTQDFNMAADIDPQN 416 PF00515.18.fs: domain 6 of 9, from 417 to 450: score 24.5, E = 5.6e-06 *->aeayynlGnaylklgkydeAieayekALeldPnn<-* a++y +G++ l + +eA+++++++++l+P+ KIAA0719 417 ADVYHHRGQLKILLDQVEEAVADFDECIRLRPES 450 PF00515.18.ls: domain 6 of 9, from 417 to 450: score 26.5, E = 8.6e-05 *->aeayynlGnaylklgkydeAieayekALeldPnn<-* a++y +G++ l + +eA+++++++++l+P+ KIAA0719 417 ADVYHHRGQLKILLDQVEEAVADFDECIRLRPES 450 PF07719.7.ls: domain 6 of 8, from 417 to 450: score 24.5, E = 0.00035 *->aealynlGlayyklgdyeeAleayekAleldPnn<-* a++++ +G++ + l + eeA+++++++++l P+ KIAA0719 417 ADVYHHRGQLKILLDQVEEAVADFDECIRLRPES 450 PF07719.7.ls: domain 7 of 8, from 492 to 525: score 25.2, E = 0.00022 *->aealynlGlayyklgdyeeAleayekAleldPnn<-* ae++ + ++a+ ++++ +A e y+k+++l+P+n KIAA0719 492 AEGYALYAQALTDQQQFGKADEMYDKCIDLEPDN 525 PF00515.18.fs: domain 7 of 9, from 492 to 525: score 16.6, E = 0.001 *->aeayynlGnaylklgkydeAieayekALeldPnn<-* ae y ++a+ ++++ +A e y+k+++l+P+n KIAA0719 492 AEGYALYAQALTDQQQFGKADEMYDKCIDLEPDN 525 PF00515.18.ls: domain 7 of 9, from 492 to 525: score 18.6, E = 0.021 *->aeayynlGnaylklgkydeAieayekALeldPnn<-* ae y ++a+ ++++ +A e y+k+++l+P+n KIAA0719 492 AEGYALYAQALTDQQQFGKADEMYDKCIDLEPDN 525 PF00515.18.fs: domain 9 of 9, from 561 to 594: score 14.6, E = 0.0038 *->aeayynlGnaylklgkydeAieayekALeldPnn<-* ay +G + ++g+ ++Ai+ ++kA+ l + KIAA0719 561 DFAYETMGTIEVQRGNMEKAIDMFNKAINLAKSE 594 PF00515.18.ls: domain 9 of 9, from 561 to 594: score 16.6, E = 0.052 *->aeayynlGnaylklgkydeAieayekALeldPnn<-* ay +G + ++g+ ++Ai+ ++kA+ l + KIAA0719 561 DFAYETMGTIEVQRGNMEKAIDMFNKAINLAKSE 594 //