hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/smart.HMMs.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-11065377/chunk_1/iprscan-20080502-11065377.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA0719 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- SM00028 181.5 8e-50 10 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- SM00028 1/10 130 163 .. 1 34 [] 41.2 1.4e-07 SM00028 2/10 169 202 .. 1 34 [] 27.0 0.0025 SM00028 3/10 203 236 .. 1 34 [] 12.1 21 SM00028 4/10 345 378 .. 1 34 [] 16.9 2.9 SM00028 5/10 383 416 .. 1 34 [] 18.8 0.75 SM00028 6/10 417 450 .. 1 34 [] 25.2 0.0088 SM00028 7/10 458 491 .. 1 34 [] 2.7 2.5e+02 SM00028 8/10 492 525 .. 1 34 [] 18.1 1.2 SM00028 9/10 526 560 .. 1 34 [] 3.4 2.1e+02 SM00028 10/10 561 594 .. 1 34 [] 16.0 5.4 Alignments of top-scoring domains: SM00028: domain 1 of 10, from 130 to 163: score 41.2, E = 1.4e-07 *->aealynlGnaylklgdydeAieyyekALeldPnn<-* a+a +n+Gn y+k g+y++Ai++y++A++l P+ KIAA0719 130 AQAAKNKGNKYFKAGKYEQAIQCYTEAISLCPTE 163 SM00028: domain 2 of 10, from 169 to 202: score 27.0, E = 0.0025 *->aealynlGnaylklgdydeAieyyekALeldPnn<-* + + n++ a+++l +++e ++++kA+el+P++ KIAA0719 169 STFYQNRAAAFEQLQKWKEVAQDCTKAVELNPKY 202 SM00028: domain 3 of 10, from 203 to 236: score 12.1, E = 21 *->aealynlGnaylklgdydeAieyyekALeldPnn<-* ++al++++ a++kl + +e++e+ + + l+ KIAA0719 203 VKALFRRAKAHEKLDNKKECLEDVTAVCILEGFQ 236 SM00028: domain 4 of 10, from 345 to 378: score 16.9, E = 2.9 *->aealynlGnaylklgdydeAieyyekALeldPnn<-* aeal+ ++ yl+ g+ + A +++k+++l + n KIAA0719 345 AEALLLRATFYLLIGNANAAKPDLDKVISLKEAN 378 SM00028: domain 5 of 10, from 383 to 416: score 18.8, E = 0.75 *->aealynlGnaylklgdydeAieyyekALeldPnn<-* a al +G +y+++ + ++++ A ++dP+n KIAA0719 383 ANALIKRGSMYMQQQQPLLSTQDFNMAADIDPQN 416 SM00028: domain 6 of 10, from 417 to 450: score 25.2, E = 0.0088 *->aealynlGnaylklgdydeAieyyekALeldPnn<-* a+++ +G++ +l + +eA+++++++++l P+ KIAA0719 417 ADVYHHRGQLKILLDQVEEAVADFDECIRLRPES 450 SM00028: domain 7 of 10, from 458 to 491: score 2.7, E = 2.5e+02 *->aealynlGnaylklgdydeAieyyekALeldPnn<-* aly+++ + +++ A++ +e++++ P + KIAA0719 458 CFALYRQAYTGNNSSQIQAAMKGFEEVIKKFPRC 491 SM00028: domain 8 of 10, from 492 to 525: score 18.1, E = 1.2 *->aealynlGnaylklgdydeAieyyekALeldPnn<-* ae + ++a+ + ++ +A e y+k+++l+P+n KIAA0719 492 AEGYALYAQALTDQQQFGKADEMYDKCIDLEPDN 525 SM00028: domain 9 of 10, from 526 to 560: score 3.4, E = 2.1e+02 *->aealynlGnaylklg.dydeAieyyekALeldPnn<-* a ++ +G++ l+ ++d+d +e +kA+e+d ++ KIAA0719 526 ATTYVHKGLLQLQWKqDLDRGLELISKAIEIDNKC 560 SM00028: domain 10 of 10, from 561 to 594: score 16.0, E = 5.4 *->aealynlGnaylklgdydeAieyyekALeldPnn<-* a+ +G + ++g+ ++Ai+ ++kA+ l+ + KIAA0719 561 DFAYETMGTIEVQRGNMEKAIDMFNKAINLAKSE 594 //