# /usr/local/bin/fasta34 -b50 -d10 -E0.01 -H -O./tmp/hk01908.fasta.huge -Q ../query/KIAA0721.ptfa ./tmplib.23663 2
FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 KIAA0721, 433 aa
 vs ./tmplib.23663 library

1987072 residues in  2037 sequences
  Expectation_n fit: rho(ln(x))= 6.6597+/-0.00678; mu= 6.2024+/- 0.461
 mean_var=165.8085+/-39.132, 0's: 0 Z-trim: 1  B-trim: 27 in 1/39
 Lambda= 0.099603

FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 37, opt: 25, open/ext: -10/-2, width:  16
The best scores are:                                      opt bits E(2037)
KIAA1750  ( 431 res)   pj02374                     ( 431)  787 124.7 1.1e-29


>>KIAA1750  ( 431 res)   pj02374                          (431 aa)
 initn: 1034 init1: 523 opt: 787  Z-score: 625.0  bits: 124.7 E(): 1.1e-29
Smith-Waterman score: 1011;  42.889% identity (67.269% similar) in 443 aa overlap (16-432:11-430)

               10        20        30                40        50  
KIAA07 RPLRRTRNSPSPTSLTSSKMSGLDGGNKLPLAQTGGLA--------APDHASGDPDRDQC
                      ... ::: . : :   :.. : .        ::: :  ::: .: 
KIAA17      AGSQRVFEAASAATMSGRSRGRKSSRAKNRGKGRAKARVRPAPDDAPRDPDPSQY
                    10        20        30        40        50     

             60        70                80        90       100    
KIAA07 QGLREETEATQVMANTGGGSLETVA--------EGGASQDPVDCGPALRVPVAGSRGGAA
       :.: :.:.:.::.:..: :.::..:        : .: . :.::: :::. .::..: ::
KIAA17 QSLGEDTQAAQVQAGAGWGGLEAAASAQLLRLGEEAACRLPLDCGLALRARAAGDHGQAA
          60        70        80        90       100       110     

          110       120       130          140       150       160 
KIAA07 TKAGQEDAPPSTKGLEAASAAEAADSS---QKNGCQLGEPRGPAGQKALEACGAGGLGSQ
       .. :   :   .. : : ..  .. ..    ::. ..:. :::::.:: :.:...: : :
KIAA17 ARPGPGKAASLSERLAADTVFVGTAGTVGRPKNAPRVGNRRGPAGKKAPETCSTAGRGPQ
         120       130       140       150       160       170     

             170       180       190       200       210       220 
KIAA07 MIPGKKAKEVTTKKRAISAAVEKEGEAGAAMEEKKVVQKEKKVAGGVKEETRPRAPKINN
       .: : . :.        .::   :. . .: ::::    :.. ::     . :  :  ..
KIAA17 VIAGGRQKK--------GAA--GENTSVSAGEEKK----EERDAG-----SGP--PATEG
         180                 190       200                  210    

             230       240       250       260       270       280 
KIAA07 CMDSLEAIDQELSNVNAQADRAFLQLERKFGRMRRLHMQRRSFIIQNIPGFWVTAFRNHP
        ::.:: .. .: :.:::::::.:.: ::::..:  :..::. .::::::::  ::.:::
KIAA17 SMDTLENVQLKLENMNAQADRAYLRLSRKFGQLRLQHLERRNHLIQNIPGFWGQAFQNHP
          220       230       240       250       260       270    

             290       300       310       320       330       340 
KIAA07 QLSPMISGQDEDMLRYMINLEVEELKHPRAGCKFKFIFQGNPYFRNEGLVKEYERRSSGR
       ::. ....:....: :. .::::::   : : :.:: :. ::::.:. :.:::    ::.
KIAA17 QLASFLNSQEKEVLSYLNSLEVEELGLARLGYKIKFYFDRNPYFQNKVLIKEYGCGPSGQ
          280       290       300       310       320       330    

             350       360       370       380       390       400 
KIAA07 VVSLSTPIRWHRGQDPQAHIHRNREGNTIPSFFNWFSDHSLLEFDRIAEIIKGELWPNPL
       ::: ::::.:  :.: :.  . : :.:   :::.:::.:: .: :.:.:::. :::::::
KIAA17 VVSRSTPIQWLPGHDLQSLSQGNPENNR--SFFGWFSNHSSIESDKIVEIINEELWPNPL
          340       350       360         370       380       390  

             410              420       430   
KIAA07 QYYLMGEGPR-------RGIRGPPRQPVESARSFRFQSG
       :.::..:: :       .: .:: .::.:...    :: 
KIAA17 QFYLLSEGARVEKGKEKEGRQGPGKQPMETTQPGVSQSN
            400       410       420       430 




433 residues in 1 query   sequences
1987072 residues in 2037 library sequences
 Scomplib [34.26]
 start: Thu Dec 18 15:13:27 2008 done: Thu Dec 18 15:13:27 2008
 Total Scan time:  0.410 Total Display time:  0.010

Function used was FASTA [version 34.26.5 April 26, 2007]