hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-11101855/chunk_1/iprscan-20080502-11101855.nocrc
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Query sequence: KIAA0721
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00956.9.fs Nucleosome assembly protein (NAP)               93.1    3.6e-25   1
PF00956.9.ls Nucleosome assembly protein (NAP)               82.5    1.2e-21   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00956.9.ls   1/1     220   410 ..     1   293 []    82.5  1.2e-21
PF00956.9.fs   1/1     269   406 ..   105   289 ..    93.1  3.6e-25

Alignments of top-scoring domains:
PF00956.9.ls: domain 1 of 1, from 220 to 410: score 82.5, E = 1.2e-21
                   *->keRieaLKnlQvehdelEakFyeEvlkLEqKYaklYqPlfeKRreII
                       +  ++L ++  e+ +++a++ + +l LE+K+  ++    ++R    
    KIAA0721   220    NNCMDSLEAIDQELSNVNAQADRAFLQLERKFGRMRRLHMQRR---- 262  

                   nGvvEPteeeiewkseeeesleEeeelvdEDgelaeeekakeaveeekee
                                                           +  +      
    KIAA0721   263 ----------------------------------------SFII------ 266  

                   eeEdpKGIPnFWLTalkNvdlvsemitEeDEpiLkyLkDIkvkesedGep
                          IP+FW+Ta++N++++s+mi   DE+ L+y   ++v+e++  ++
    KIAA0721   267 -----QNIPGFWVTAFRNHPQLSPMISGQDEDMLRYMINLEVEELKH-PR 310  

                   sGFkLeFhFDsaNpYFtNkVLTKtYhlkseldpsDPfsFegpeiekaeGc
                   +G k  F F   NpYF N+ L K+Y  +            ++  + + ++
    KIAA0721   311 AGCKFKFIFQG-NPYFRNEGLVKEYERR-----------SSGR-VVSLST 347  

                   eIdWkkgKnNlTvktikKKQkhKgrgtvRtitktvpndSFFNFFsPpkvp
                   +I W  g +   +  i    ++++ +t           SFFN+Fs++ + 
    KIAA0721   348 PIRWHRGQD--PQAHIH---RNREGNTI---------PSFFNWFSDHSLL 383  

                   dEdeDqeeeldEDleelLelDyeIGeviRDrIIPrAVlyFtgeaie<-*
                   +                    + I+e i+  ++P++++y+++       
    KIAA0721   384 E-------------------FDRIAEIIKGELWPNPLQYYLMGEGP    410  

PF00956.9.fs: domain 1 of 1, from 269 to 406: score 93.1, E = 3.6e-25
                   *->IPnFWLTalkNvdlvsemitEeDEpiLkyLkDIkvkesedGepsGFk
                      IP+FW+Ta++N++++s+mi   DE+ L+y   ++v+e++  +++G k
    KIAA0721   269    IPGFWVTAFRNHPQLSPMISGQDEDMLRYMINLEVEELKH-PRAGCK 314  

                   LeFhFDsaNpYFtNkVLTKtYhlkseldpsDPfsFegpeiekaeGceIdW
                     F F   NpYF N+ L K+Y  +            ++  + + +++I W
    KIAA0721   315 FKFIFQG-NPYFRNEGLVKEYERR-----------SSGR-VVSLSTPIRW 351  

                   kkgKnNlTvktikKKQkhKgrgtvRtitktvpndSFFNFFsPpkvpdEde
                     g +   +  i    ++++ +t           SFFN+Fs++ + +   
    KIAA0721   352 HRGQD--PQAHIH---RNREGNTI---------PSFFNWFSDHSLLE--- 384  

                   DqeeeldEDleelLelDyeIGeviRDrIIPrAVlyFtg<-*
                                    + I+e i+  ++P++++y+++   
    KIAA0721   385 ----------------FDRIAEIIKGELWPNPLQYYLM    406  

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