hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-11133880/chunk_1/iprscan-20080502-11133880.nocrc
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Query sequence: KIAA0723
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00451                                                  78.9      6e-19   2
SM00360                                                  70.4    2.2e-16   2

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00451    1/2     294   328 ..     1    37 []    35.5  7.2e-06
SM00360    1/2     405   475 ..     1   121 []    24.8   0.0089
SM00360    2/2     503   573 ..     1   121 []    45.6  6.7e-09
SM00451    2/2     804   839 ..     1    37 []    43.4  2.9e-08

Alignments of top-scoring domains:
SM00451: domain 1 of 2, from 294 to 328: score 35.5, E = 7.2e-06
                   *->tggfyCklCnvtfkddeisvreaHlkGkkHkknvkky<-*
                      ++++ C++C++ ++ +++++  +H++G+ H ++++++   
    KIAA0723   294    GYPHLCSICDLPVH-SNKEW-SQHINGASHSRRCQLL    328  

SM00360: domain 1 of 2, from 405 to 475: score 24.8, E = 0.0089
                   *->tlfVgNLndppdvteedLrelFkevksvevfraeteskfGkvvsvri
                      ++++  +    +    +L +l               ++fG v+s ++
    KIAA0723   405    VVHIMDF-QRGKNLRYQLLQLV--------------EPFG-VISNHL 435  

                   vrdkdnilirressleqkvqlgkdsgTGkskGfaFVeFedeedAekAlli
                   + +k                           + aF+e+++ edA++A  +
    KIAA0723   436 ILNKI--------------------------NEAFIEMATTEDAQAA--V 457  

                   ealnaskGkeledgGrptlglrVe<-*
                   + +  ++   +   G+p   +rV    
    KIAA0723   458 DYYT-TTPALV--FGKP---VRVH    475  

SM00360: domain 2 of 2, from 503 to 573: score 45.6, E = 6.7e-09
                   *->tlfVgNLndppdvteedLrelFkevksvevfraeteskfGkvvsvri
                      +++ +NL +++  +++ + +l               +++Gk+++  +
    KIAA0723   503    VIHLSNL-PHSGYSDSAVLKLA--------------EPYGKIKNYIL 534  

                   vrdkdnilirressleqkvqlgkdsgTGkskGfaFVeFedeedAekAlli
                   +r k                             aF+e+e++edA +   +
    KIAA0723   535 MRMKS---------------------------QAFIEMETREDAMAM--V 555  

                   ealnaskGkeledgGrptlglrVe<-*
                   ++   +k  ++  +Gr+   ++V+   
    KIAA0723   556 DHCL-KKALWF--QGRC---VKVD    573  

SM00451: domain 2 of 2, from 804 to 839: score 43.4, E = 2.9e-08
                   *->tggfyCklCnvtfkddeisvreaHlkGkkHkknvkky<-*
                      ++gfyCklC+++++++e++   +H+++  H +++kk+   
    KIAA0723   804    KTGFYCKLCSLFYTNEEVAK-NTHCSSLPHYQKLKKF    839  

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