hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-11170314/chunk_1/iprscan-20080502-11170314.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA0725 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF02862.8.ls DDHD domain 370.9 1.9e-108 1 PF02862.8.fs DDHD domain 369.1 6.4e-108 1 PF00536.20.fs SAM domain (Sterile alpha motif) 38.2 1.3e-10 1 PF00536.20.ls SAM domain (Sterile alpha motif) 40.2 6.8e-09 1 PF07647.7.fs SAM domain (Sterile alpha motif) 22.9 4.7e-06 1 PF07647.7.ls SAM domain (Sterile alpha motif) 23.0 0.00099 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF07647.7.fs 1/1 244 301 .. 1 64 [. 22.9 4.7e-06 PF07647.7.ls 1/1 244 309 .. 1 72 [] 23.0 0.00099 PF00536.20.ls 1/1 245 307 .. 1 65 [] 40.2 6.8e-09 PF00536.20.fs 1/1 245 307 .. 1 65 [] 38.2 1.3e-10 PF02862.8.fs 1/1 357 562 .. 1 276 [] 369.1 6.4e-108 PF02862.8.ls 1/1 357 562 .. 1 276 [] 370.9 1.9e-108 Alignments of top-scoring domains: PF07647.7.fs: domain 1 of 1, from 244 to 301: score 22.9, E = 4.7e-06 *->veswslesvaeWLesiglegqYkdnFsdqgitglellllrlteedLa +++ +++++ e L+++ l ++ d+F++ +++ e+l + t dL KIAA0725 244 MDQGDTPTLEEDLKKLQL-SEFFDIFEKEKVDK-EAL-ALCTDRDL- 286 klalGitsvghRkkilk<-* + ++Gi +g+Rkkil+ KIAA0725 287 Q-EIGI-PLGPRKKILN 301 PF07647.7.ls: domain 1 of 1, from 244 to 309: score 23.0, E = 0.00099 *->veswslesvaeWLesiglegqYkdnFsdqgitglellllrlteedLa +++ +++++ e L+++ l ++ d+F++ +++ e+l + t dL KIAA0725 244 MDQGDTPTLEEDLKKLQL-SEFFDIFEKEKVDK-EAL-ALCTDRDL- 286 klalGitsvghRkkilkkiqelkqq<-* + ++Gi +g+Rkkil+ + k + KIAA0725 287 Q-EIGI-PLGPRKKILNYFSTRKNS 309 PF00536.20.ls: domain 1 of 1, from 245 to 307: score 40.2, E = 6.8e-09 *->dgwsfesVgeWLesiglgqYidnFlsagyidgdtllqlteeDLedlG d+ + ++ e L+++ l++ d F +++++d ++l+++t+ DL+++G KIAA0725 245 DQGDTPTLEEDLKKLQLSEFFDIF-EKEKVDKEALALCTDRDLQEIG 290 vtllGHrkKIlssIqgLk<-* + lG+rkKIl+ + k KIAA0725 291 I-PLGPRKKILNYFSTRK 307 PF00536.20.fs: domain 1 of 1, from 245 to 307: score 38.2, E = 1.3e-10 *->dgwsfesVgeWLesiglgqYidnFlsagyidgdtllqlteeDLedlG d+ + ++ e L+++ l++ d F +++++d ++l+++t+ DL+++G KIAA0725 245 DQGDTPTLEEDLKKLQLSEFFDIF-EKEKVDKEALALCTDRDLQEIG 290 vtllGHrkKIlssIqgLk<-* + lG+rkKIl+ + k KIAA0725 291 I-PLGPRKKILNYFSTRK 307 PF02862.8.fs: domain 1 of 1, from 357 to 562: score 369.1, E = 6.4e-108 *->LdFkvenfFaiGSPlGlfltlRglkiGDRPEFPngdslDllvsrpaC L++k+e+fFa+GSP+G+flt+Rg +++D+++++p+C KIAA0725 357 LIYKPEIFFAFGSPIGMFLTVRG-----------LKRIDPNYRFPTC 392 kqfYNIFHPlDPvAYRLEPLvvpefsKhikPvkIphykgrkrLglelsep k+f+NI+HP+DPvAYR+EP+vvp ++ ++P++Iph+kgrkr++lel+e+ KIAA0725 393 KGFFNIYHPFDPVAYRIEPMVVPGVE--FEPMLIPHHKGRKRMHLELREG 440 ltrviadlpqnflsnlqssiksspvltsasgasrkneeeteevkestars ltr+++dl++n+l +l++++ks +t+a++++ +++e++ee++++ KIAA0725 441 LTRMSMDLKNNLLGSLRMAWKS---FTRAPYPALQASETPEETEAE---- 483 GCSPRmTpapeqtenltemliareeravesqpssfgrsSiektkStaslg +e+++e+ +++++++e+ KIAA0725 484 ------------PESTSEK--PSDVNTEET-------------------- 499 svnktvaenietapeaskeedlaikvlmskLngtkRIDYvLqePaallaf ++a+kee+l+i+v ++Lng++RIDYvLqe +++++f KIAA0725 500 -------------SVAVKEEVLPINV--GMLNGGQRIDYVLQE-KPIESF 533 nsYlsalksHasYWeSeDvAlFlLkeiyr<-* n+Yl+al+sH++YWeSeD++l++Lkeiy+ KIAA0725 534 NEYLFALQSHLCYWESEDTVLLVLKEIYQ 562 PF02862.8.ls: domain 1 of 1, from 357 to 562: score 370.9, E = 1.9e-108 *->LdFkvenfFaiGSPlGlfltlRglkiGDRPEFPngdslDllvsrpaC L++k+e+fFa+GSP+G+flt+Rg +++D+++++p+C KIAA0725 357 LIYKPEIFFAFGSPIGMFLTVRG-----------LKRIDPNYRFPTC 392 kqfYNIFHPlDPvAYRLEPLvvpefsKhikPvkIphykgrkrLglelsep k+f+NI+HP+DPvAYR+EP+vvp ++ ++P++Iph+kgrkr++lel+e+ KIAA0725 393 KGFFNIYHPFDPVAYRIEPMVVPGVE--FEPMLIPHHKGRKRMHLELREG 440 ltrviadlpqnflsnlqssiksspvltsasgasrkneeeteevkestars ltr+++dl++n+l +l++++ks +t+a++++ +++e++ee++++ KIAA0725 441 LTRMSMDLKNNLLGSLRMAWKS---FTRAPYPALQASETPEETEAE---- 483 GCSPRmTpapeqtenltemliareeravesqpssfgrsSiektkStaslg +e+++e+ +++++++e+ KIAA0725 484 ------------PESTSEK--PSDVNTEET-------------------- 499 svnktvaenietapeaskeedlaikvlmskLngtkRIDYvLqePaallaf ++a+kee+l+i+v ++Lng++RIDYvLqe +++++f KIAA0725 500 -------------SVAVKEEVLPINV--GMLNGGQRIDYVLQE-KPIESF 533 nsYlsalksHasYWeSeDvAlFlLkeiyr<-* n+Yl+al+sH++YWeSeD++l++Lkeiy+ KIAA0725 534 NEYLFALQSHLCYWESEDTVLLVLKEIYQ 562 //