hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-11340932/chunk_1/iprscan-20080502-11340932.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA0735 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF07690.6.fs Major Facilitator Superfamily 122.4 3.4e-34 2 PF07690.6.ls Major Facilitator Superfamily 119.8 7e-33 1 PF00083.14.fs Sugar (and other) transporter 55.9 1.2e-15 1 PF00083.14.ls Sugar (and other) transporter -60.4 5.2e-05 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00083.14.ls 1/1 128 707 .] 1 488 [] -60.4 5.2e-05 PF07690.6.fs 1/2 139 326 .. 1 204 [. 77.0 1.7e-21 PF07690.6.ls 1/1 139 674 .. 1 397 [] 119.8 7e-33 PF00083.14.fs 1/1 166 346 .. 48 236 .. 55.9 1.2e-15 PF07690.6.fs 2/2 563 674 .. 270 397 .] 45.4 1.3e-12 Alignments of top-scoring domains: PF00083.14.ls: domain 1 of 1, from 128 to 707: score -60.4, E = 5.2e-05 *->valvaalgGsflfGYDtgvigafltlisflkrfglltssgadeelvg ++ + f+ G + g +++ s + ++ + ++ KIAA0735 128 HGRFQWILF-FVLGLALMADGVEVFVVS---FALPSAEKDMCL---- 166 ystvltglivsifsvGcliGslfaGwlgdrfGRkksllianvlfviGall s+++ g+ i+ +G + G++++G l+d++GRk l +++++ a l KIAA0735 167 -SSSKKGMLGMIVYLGMMAGAFILGGLADKLGRKRVLSMSLAVNASFASL 215 mgaakgkttiGgksvymlivGRvivGlgvGgisvlvPmYisEiAPkklRG + + +++ ++++R+i+G+g+Gg+ +v Y sE ++RG KIAA0735 216 SSFVQ--------GYGAFLFCRLISGIGIGGALPIVFAYFSEFLSREKRG 257 alvslyQlaitfGilvAaii........glglnktnnssnnsdgWriplg s+ ++ +G+l A + + ++ g+g++++ n+ Wr+++ KIAA0735 258 EHLSWLGIFWMTGGLYASAMawsiiphyGWGFSMGTNYH--FHSWRVFVI 305 lqlvpalllligllflPESPRwLvekgkleeArevLakllrgv....... ++++p ++l f PESPR+L+e gk++eA +L++ +++ + +++ KIAA0735 306 VCALPCTVSMVALKFMPESPRFLLEMGKHDEAWMILKQ-VHDTnmrakgt 354 ............sdvdqeiqeekdeleasreee.....kagkaswlelfs +++ + ++ ++++ +e++e++ + +++ + + + k+ w+ + KIAA0735 355 pekvftvsniktPKQMDEFIEIQSSTGTWYQRWlvrfkTIFKQVWDNALY 404 rktrpkyrqrllmgvmlqifQQltGiNaifYYsptife..........sl +p yr +l+ +++++ ++++ +++ +i ++++ +++ ++ KIAA0735 405 CVMGP-YRMNTLILAVVWFAMAFSYYGLTVWFPDMIRYfqdeeykskmKV 453 GvsdstasllvtiivgvvNfvfTfialiflvdrfGRR............. +++ ++ +ti + N + + + d+f+R+ ++ +++ + KIAA0735 454 FFGEH--VYGATINFTMENQIHQHGK--LVNDKFTRMyfkhvlfedtffd 499 .................................................. + ++ +++++ ++ + +++ +++ +++ + + +++ +++++ KIAA0735 500 ecyfedvtstdtyfknctiestifyntdlyehkfincrfinstfleqkeg 549 .........................................pllLlGaag + + +++++ + ++ + +++ + ++ ++ ++ ++ + KIAA0735 550 chmdleqdndfliylvsflgslsvlpgniisallmdrigrlKMIGGSMLI 599 maicmvvlgasvivallglnkskdpsskaagivaivfillfiafFalgwG a+c+++l ++g ++ + + +l+ + a w+ KIAA0735 600 SAVCCFFL-------FFGNSE---------SAMIGWQCLFCGTSIA-AWN 632 pvpwvivsElFPlgvRpkamaiataanwlanfligflfpiitgaiglflg + vi El+P++ R+ a++i + + +l +++f + +g + KIAA0735 633 ALD-VITVELYPTNQRATAFGILNGLCKFGAILGNTIFASFVGITK---- 677 gyvflvfagllvlfiifvfffvPETkGrtLeeieelf<-* v ++ a+ +++++ + + +PET ++l KIAA0735 678 -VVPILLAAASLVGGGLIALRLPETRE------QVLM 707 PF07690.6.fs: domain 1 of 2, from 139 to 326: score 77.0, E = 1.7e-21 *->lflaaflaglgrsllgpalpylassleesslgqtdllspteiglllt l la + g ++++++alp ++ ls++ g+l + KIAA0735 139 LGLALMADGVEVFVVSFALPSAE---KD--MC----LSSSKKGMLGM 176 afalgyalaqplaGrlsDrfGrrvyirlkpvlllglllfalgslllafas + +lg+ ++++++G l+D++Gr+ r vl+++l++ a ++ l+ f+ KIAA0735 177 IVYLGMMAGAFILGGLADKLGRK---R---VLSMSLAVNASFASLSSFVQ 220 stslwllliarallqGlgagllapaaaaliadwfppeergralgivsagf + ++l+ r++ +G+g g+++p + a++++ +++e+rg l++++ ++ KIAA0735 221 --GYGAFLFCRLI-SGIGIGGALPIVFAYFSEFLSREKRGEHLSWLGIFW 267 glGaalggpllggllaalgwwwssgt.....fWraaFlilgilallaall G++ +++++ +++ ++gw++s gt+ + + Wr+ ++ ++ + +++++ KIAA0735 268 MTGGLYASAMAWSIIPHYGWGFSMGTnyhfhSWRVFVIVCALPCTVSMVA 317 llvlfllpeppa<-* l + pe+p+ KIAA0735 318 ---LKFMPESPR 326 PF07690.6.ls: domain 1 of 1, from 139 to 674: score 119.8, E = 7e-33 *->lflaaflaglgrsllgpalpylassleesslgqtdllspteiglllt l la + g ++++++alp ++ ls++ g+l + KIAA0735 139 LGLALMADGVEVFVVSFALPSAE---KD--MC----LSSSKKGMLGM 176 afalgyalaqplaGrlsDrfGrrvyirlkpvlllglllfalgslllafas + +lg+ ++++++G l+D++Gr+ r vl+++l++ a ++ l+ f+ KIAA0735 177 IVYLGMMAGAFILGGLADKLGRK---R---VLSMSLAVNASFASLSSFVQ 220 stslwllliarallqGlgagllapaaaaliadwfppeergralgivsagf + ++l+ r++ +G+g g+++p + a++++ +++e+rg l++++ ++ KIAA0735 221 --GYGAFLFCRLI-SGIGIGGALPIVFAYFSEFLSREKRGEHLSWLGIFW 267 glGaalggpllggllaalgwwwssgt.....fWraaFlilgilallaall G++ +++++ +++ ++gw++s gt+ + + Wr+ ++ ++ + +++++ KIAA0735 268 MTGGLYASAMAWSIIPHYGWGFSMGTnyhfhSWRVFVIVCALPCTVSMVA 317 llvlfllpeppakasgkpeeeeagi......................... + f ++ p+ + ++ +e i ++ +++ + ++++++ + ++ + KIAA0735 318 --LKFMPESPRFLLEMGKHDEAWMIlkqvhdtnmrakgtpekvftvsnik 365 .................................................. ++++ ++ + ++++++ ++ + ++ ++ ++ ++ + ++ KIAA0735 366 tpkqmdefieiqsstgtwyqrwlvrfktifkqvwdnalycvmgpyrmntl 415 .................................................. + + + ++ + ++++ +++ + ++ + + + KIAA0735 416 ilavvwfamafsyygltvwfpdmiryfqdeeykskmkvffgehvygatin 465 .................................................. + +++ + ++ +++ ++ + +++ ++ ++ +++++ ++ KIAA0735 466 ftmenqihqhgklvndkftrmyfkhvlfedtffdecyfedvtstdtyfkn 515 .......alr.lll.p.lllillalflllaaflalltflplylllpllls + +++ + + l + +++ +++ +++l + + + KIAA0735 516 ctiestiFYNtDLYeHkFINCRFI--------------NSTFLEQKEGCH 551 .saglslsalaagllllalglggllgglllggrlsdrlgrglarkgeaea + + +l+++lg +++l g ++++ l+dr+g KIAA0735 552 mDLEQDND--FLIYLVSFLGSLSVLPGNIISALLMDRIG----------- 588 errrllllgllllalgllllafapslliallllalvllGlgfggvfpaln r +++ ++l+ a+++++l+f++s + +++ + +l+ +++ al KIAA0735 589 -RLKMIGGSMLISAVCCFFLFFGNSES--AMIGWQCLFCGTSIAAWNALD 635 alasdlappeaqerGtasGlyntagslggalgpllgGllld<-* ++++l+p + r+ta+G++n + +g++lg ++++ ++ KIAA0735 636 VITVELYPTN--QRATAFGILNGLCKFGAILGNTIFASFVG 674 PF00083.14.fs: domain 1 of 1, from 166 to 346: score 55.9, E = 1.2e-15 *->ystvltglivsifsvGcliGslfaGwlgdrfGRkksllianvlfviG +s+++ g+ i+ +G + G++++G l+d++GRk l +++++ KIAA0735 166 LSSSKKGMLGMIVYLGMMAGAFILGGLADKLGRKRVLSMSLAVNASF 212 allmgaakgkttiGgksvymlivGRvivGlgvGgisvlvPmYisEiAPkk a l+ + +++ ++++R+i+G+g+Gg+ +v Y sE + KIAA0735 213 ASLSSFVQ--------GYGAFLFCRLISGIGIGGALPIVFAYFSEFLSRE 254 lRGalvslyQlaitfGilvAaii........glglnktnnssnnsdgWri +RG s+ ++ +G+l A + + ++ g+g++++ n+ Wr+ KIAA0735 255 KRGEHLSWLGIFWMTGGLYASAMawsiiphyGWGFSMGTNYH--FHSWRV 302 plglqlvpalllligllflPESPRwLvekgkleeArevLakllrgvsdvd ++ ++++p ++l f PESPR+L+e gk++eA +L++ +d KIAA0735 303 FVIVCALPCTVSMVALKFMPESPRFLLEMGKHDEAWMILKQ------VHD 346 <-* KIAA0735 - - PF07690.6.fs: domain 2 of 2, from 563 to 674: score 45.4, E = 1.3e-12 *->llllalglggllgglllggrlsdrlgrglarkgeaeaerrrllllgl +l+++lg +++l g ++++ l+dr+g r +++ ++ KIAA0735 563 YLVSFLGSLSVLPGNIISALLMDRIG------------RLKMIGGSM 597 lllalgllllafapslliallllalvllGlgfggvfpalnalasdlappe l+ a+++++l+f++s + +++ + +l+ +++ al ++++l+p + KIAA0735 598 LISAVCCFFLFFGNSES--AMIGWQCLFCGTSIAAWNALDVITVELYPTN 645 aqerGtasGlyntagslggalgpllgGllld<-* r+ta+G++n + +g++lg ++++ ++ KIAA0735 646 --QRATAFGILNGLCKFGAILGNTIFASFVG 674 //